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JGI@25: Solving the Mystery of the Missing Oil
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that … described the early efforts in his keynote talk at JGI’s 2011 Annual Genomics of Energy & Environment Meeting: “What …
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Expanding Virophage Diversity
… 44,221 total virophage partial sequences, including over 28,000 unique MCP sequences.  Further analysis led to the identification of 328 “high quality” (based on completeness) diverse new … Paez-Espino  discussed an early version of the paper at the 2018 Viral EcoGenomics & Applications (VEGA) Symposium. The …
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JGI Hosts GPU Hackathon in May
WHEN: May 6-10, 2019 WHERE: JGI With DOE investments in graphical processing … is organizing nearly a dozen hackathons around the world in 2019, only the JGI hackathon is particularly focused on … code to a new architecture. Proposals are due March 1, 2019 for the JGI hackathon, set for May 6-10, 2019, in …
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
Complex Systems (LRC) in Menlo Park, Calif. In the June 24, 2022, issue of the journal Science, Volland and colleagues, … professor at the Université des Antilles in Guadeloupe, in 2009. Gros’ research focuses on marine mangrove systems, and …
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Uncovering Novel Genomes from Earth’s Microbiomes
… archaea by 44%, is now available and  described November 9, 2020 in  Nature Biotechnology . Known as the GEM (Genomes … this massive dataset, Nayfach clustered the MAGs into 18,000 candidate species groups, 70% of which were novel …
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Pinning Down a Piece of Photosynthesis
… and longtime JGI collaborator Sabeeha Merchant’s group. In 2011, they inventoried a swath of blueprints to find parts …
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A Collaboration to Improve Plant Genome Annotations Across Species
… include six more species, so in total, we are looking at 18 different species, which included over 2000 RNA Seq libraries. As I previously mentioned, this is … to standardize the experimental protocols. Then, in 2020, seven more groups joined the project to contribute to …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… (4X or four copies of the genome) and octoploids (8X or eight copies of the genome). Lovell et al. focused on … it’s been prioritized in breeding efforts, and also because 8X switchgrass is generally thought to harbor less genetic … in 4X switchgrass, we were surprised by the number of 8X individuals that had been collected from field work. When …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… a colored-in page of that book. Published online September 28, 2022, in Cell , a team led by researchers at Tel Aviv …
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Ray Turner Completes Last Tour of Lab Duty at JGI
… one constant for the Joint Genome Institute. On July 1, 2020, that all changed. Ray’s vigilant stewardship as JGI’s … of Building 310, adding the crowning piece of the entire 80,000 square foot, three-building campus at 2800 Mitchell …
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Evolution of a Fungal Gene Expression Regulator
… life, they tracked the evolution of 5mC pathways across 528 species. The researchers found that unlike most flowering … of the US Department of Energy under contract no. DE-AC02-05CH11231. The Georgia Advanced Computing Resource Center …
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Tracking the Origins of Methane-Producing Microbes
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