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Mining Metagenomes for Cas Proteins
… associated proteins that can target single-stranded DNA (ssDNA). The discovery was made possible by mining the … Microbial Genomes and Microbiomes (IMG/M) suite of tools managed by the U.S. Department of Energy (DOE) Joint … from infecting viruses and phages. In the event of a new infection, the microbes use the genetic information …
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MicroSyn: A user friendly tool for detection of microsynteny in a gene family
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Obtaining Comparative Genomic Data with the VISTA Family of Computational Tools
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Single Cell Research Group
… is also reflected in the strongly biased representation of sequenced genomes in the public domain, the bulk of which … (2017). Woyke T . & Rubin E.M. Evolution. Searching for new branches on the tree of life. Science. 346:698-9 (2014). … and genomes from cow rumen. Science 331, 463-7 (2011). Newton I.L., Woyke T ., Auchtung T.A., Dilly G.F., Dutton …
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Widespread natural variation of DNA methylation within angiosperms
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On the origin and evolutionary consequences of gene body DNA methylation
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Programmed DNA destruction by miniature CRISPR-Cas14 enzymes
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IMG/VR: a database of cultured and uncultured DNA Viruses and retroviruses
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De novo DNA synthesis using polymerase-nucleotide conjugates
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DNA repair enzymes of the Antarctic Dry Valley metagenome
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DNABERT-S: pioneering species differentiation with species-aware DNA embeddings
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… leveraged data from the 1000 Fungal Genomes project to form new connections between fungal guilds, genes and function. … RNA to understand gene expression, and developed new tools to map that soil RNA to fungal genomes.  The U.S. … who nominated species for sequencing and then sent DNA and RNA samples to JGI,” Grigoriev said. All of these …
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