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UC Merced Interns Reflect on Their JGI Summer Projects
… language processing techniques to categorize genetic information. Learn more about their work here in a series of videos produced by JGI Communications & Outreach intern Ashleigh Papp. The … virtual events and technology enabled a fruitful experience for mentors and students alike. Tools like Slack, Google …
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Nigel Mouncey
… genetics that started with his education and carried forward into his roles as a senior research scientist at … of novel production organisms and fermentation processes for vitamins, insecticides, fungicides, platform chemicals, … for improved growth rate and growth yield on glucose by elimination of gluconate formation. Appl Environ …
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How Maize Makes An Antibiotic Cocktail
… have now revealed that just a handful of enzymes are needed to transform zealexins and related precursors into a bonanza of … was knocked out. Interestingly, the enzymes the team uncovered were found in multiple, semi-redundant clusters on …
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Gut Fungi: Unexpected Source of Novel Chemicals
… — an energetically expensive feat thought to be too costly for them. The Science Anaerobic fungi, which die in the … the genomes of four anaerobic fungal species has revealed, for the first time, that this group is unexpectedly … to help bolster the bioeconomy. Summary A team led by Michelle O’Malley, a chemical engineer at the University …
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Virus-Microbe Interactions of Mud Island Mangroves
… coast of south Texas. At the JGI, Rambo’s work was overseen by Susannah Tringe, head of the Microbial Systems group. He … the SCGSR research experience was “an ideal opportunity for me to get real-world experience.” As he finalizes his … as a computational biologist. My primary future goal is to form a startup.” …
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Jane Grimwood Named HudsonAlpha Genomics Chair
Spencer Chair in Genomics at the HudsonAlpha Institute for Biotechnology! Loretta Spencer served as a manyterm mayor of Huntsville, Alabama and is known for her contributions to rapidly growing the economy of … was a group lead at Stanford Human Genome Center directed by Richard Myers, and among the Center staff that moved to …
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Introducing New Members of the JGI User Executive Committee
… of members. Each of the researchers had particular reasons for wanting to serve on the UEC. Hatzenpichler, who studies … that certain data sharing policies fail to represent the needs of large parts of the user community. “Large sections … systems, noted that she would like to help advance JGI efforts aimed at “understanding complex communities and …
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JGI Early Career Researchers Featured in mSystems Special Issue
… sorting (FACS) to sort cells into several small pools before sequencing to recover rare microbes. The technique was … paper, uncovering giant virus sequences in soil for the first time. A second approach known as DNA stable … global ecological and environmental processes, especially by modifying host cell metabolism and altering cell fitness. …
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Fishing for Novel Cellulose Degraders
The Science One of the most vital pieces of equipment for fly fishing is a boxful of lures. Designed with feathers … specific catches. A similar technique has been developed by researchers led by Tanja Woyke at the U.S. Department of … a microbial community from geothermal hot springs, they uncovered a novel cellulose-degrading bacterium typically …
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An Integrated Dataset to Understand Ecosystem Interaction
Research yields a comprehensive tree and soil dataset for understanding the dynamic relationship between poplar … molecular features to large ecosystem-level processes for the first time. By collecting data from 27 different poplar ( Populus …
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Three Join the JGI User Executive Committee
… and Elizabeth “Lizzy” Wilbanks of the University of California, Santa Barbara. They join eight other JGI users … she is committed to representing and advocating for early career users on the UEC. As a user of the JGI and … and resources to best meet the broad base of user community needs. Wilbanks is an Assistant Professor in the Department …
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Doubling Down on Known Protein Families
… a novel approach to better understand microbial communities by looking at protein function within them. The work was led … unique makeup of microbe players and the functions they perform, artificially replicating a whole community is … each individual microbial species within a community. Therefore, the process hinges on referencing to existing genome …
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