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Evidence-based green algal genomics reveals marine diversity and ancestral characteristics of land plants
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Discovery of Novel Plant Interaction Determinants from the Genomes of 163 Root Nodule Bacteria
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Comparative genomics analysis of drought response between obligate CAM and C3 photosynthesis plants
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Genome evolution and transcriptome plasticity is associated with adaptation to monocot and dicot plants in Colletotrichum fungi.
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The JGI Data Portal: Improving User Experience
… agile collaboration between the JGI and the information technology company Truss has resulted in the JGI … via Phytozome, the improvements it encompasses are more broadly applicable to the download processes from the … of data, accessible through the Genome Portal. “The task of making data more findable and easier to download is a …
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RECAP: Keynote Speakers Talk Innovation at 2022 JGI Annual Meeting
… Nobel Laureate Jennifer Doudna of the University of California, Berkeley and Berkeley Lab, who discussed the … to optimize the gene editing function of CRISPR-Cas9, to more advanced therapeutic applications like overcoming … genetics. This work paved the way to move beyond a single case-study, the reference genome, to something that …
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Computationally Classifying Fungal Lifestyles
… nutrients from decaying organic matter (saprobes), and many plant pathogens known to infect most major food crops and feedstocks for biomass and biofuel production. Learning about the ecology and evolution of  Dothideomycetes could provide more insights into how these fungi have adapted to stress …
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Ray Turner Completes Last Tour of Lab Duty at JGI
… For the last 15 years, Ray Turner has been one constant for … of workforce safety and diversity and working together and making a welcoming and inclusive workplace. I think all of … golfing, traveling a bit, and riding his Harley. He is rumored to soon be helping Berkeley Lab and Biosciences with …
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Microbiome Data Science Team
… analysis and interpretation is creating new opportunities for breakthrough discoveries and catalyzing a major … The research efforts of the group have concentrated in demonstrating the … 2014), unearthing hundreds of thousands of new viral genomes and their predicted hosts (Nature 2016, Science …
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Tracing the Evolution of Shiitake Mushrooms
… 60 existing sequences, this work expands the family tree for Lentinula. Within those samples, this study also tracks … and their evolution could provide strategies for converting plant waste into sugars for  biofuel production. … region. Overall, pangenome analysis showed significantly more genetic diversity in wild Lentinula species compared …
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Complete Genome Sequence of the Metabolically Versatile Plant Growth-Promoting Endophyte Variovorax paradoxus S110
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Phenotypic and genomic signatures of interspecies cooperation and conflict in naturally occurring isolates of a model plant symbiont
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