Results

Natural Prodcast Episode 24: Jackie Winter and SMC
… of Natural Prodcast. A little bit of a bonus episode, since I’m off schedule, but this is an important one that … are familiar with JGI’s IMG data portal , the Integrated Microbial Genomics, there was a subsection of that called … and they used that on all of IMG’s genomes. But IMG is microbial genomes — mostly bacteria and archaea. And we knew …
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Supercharging SIP in the Fungal Hyphosphere
… High-throughput stable isotope probing helps ID novel interactions between bacteria and fungi … automated aspects of a commonly-used process for studying microbial communities, with results published in the  November 2022 … The work conducted by the U.S. Department of Energy Joint Genome Institute ( https://ror.org/04xm1d337 ), a DOE …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… Congratulations to US Department of Energy (DOE) Joint Genome Institute (JGI) staff scientist Simon Roux , who … and management best practices that have advanced the microbial sciences. The Prize also recognizes innovative and … viral diversity, understand the role of viruses in natural ecosystems, and functionally explore viral genetic …
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Defining the Sphagnum Core Microbiome across the North American Continent Reveals a Central Role for Diazotrophic Methanotrophs in the Nitrogen and Carbon Cycles of Boreal Peatland Ecosystems
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Microbial Community Field Surveys Reveal Abundant Pseudomonas Population in Sorghum Rhizosphere Composed of Many Closely Related Phylotypes
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Position-Specific Metabolic Probing and Metagenomics of Microbial Communities Reveal Conserved Central Carbon Metabolic Network Activities at High Temperatures
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Ecological Dichotomies Arise in Microbial Communities Due to Mixing of Deep Hydrothermal Waters and Atmospheric Gas in a Circumneutral Hot Spring
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Integration of Metagenomic and Stable Carbon Isotope Evidence Reveals the Extent and Mechanisms of Carbon Dioxide Fixation in High-Temperature Microbial Communities
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Viral community analysis in a marine oxygen minimum zone indicates increased potential for viral manipulation of microbial physiological state
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Microbial communities associated with sympagic and planktonic habitats during a polar vortex influencing the North American Great Lakes Basin
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User Advisory Committees
… All staff members of the US Department of Energy (DOE) Joint Genome Institute (JGI) commit to Lawrence Berkeley National Lab’s … values, which guide the relationships we nurture in our workplace and seek to establish with our … the JGI user community and is responsible for providing input and advice on JGI policies and practices that …
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SIPs with Standards
… Stable Isotope Probing (SIP) is a powerful technique for studying microbial communities. These experiments can show which microbes are …
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