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Olpidium, The Key to the Origin of Terrestrial Fungi
… Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, found that the fungus Olpidium is a … associated virus LBVaV; genus Varicosavirus ) which may severely reduce crop yields. Like the typical chytrids … few splits in the non-flagellated terrestrial fungi were extremely short, suggesting that there were a series of …
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DAP-seq Drives Robust Mapping of Gene Regulation
… Now, with improvements to DNA Affinity Purification Sequencing (DAP-seq), these barriers are falling. As  … at the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … conservation; and integration with single-cell RNA sequencing reveals how transcription factors control gene …
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Partnerships: Adopt-A-Genome
… of genome scientists and recruit new talent for biosciences.  Adopt-a-Genome has: ~20 faculty from institutions …
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Fishing for Novel Cellulose Degraders
… hook” single-cell genomic approach to bioprospecting. The Science One of the most vital pieces of equipment for fly … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … pools, followed by whole genome amplification and shotgun sequencing. The team first tested the approach on bacterial …
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The Busy World of Deep Sea Eruptions
… communities, and understanding how they’ve adapted to this extreme environment.   …
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Partners
… others providing complementary expertise to advance the science and serve as impact multipliers . The JGI has a … through the Facilities Integrating Collaborations for User Science (FICUS) program.     …
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How Filamentous Fungi Sense Food
… networks in the model fungus  Neurospora crassa . The Science A team led by researchers at the University of … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … and optimized by Ronan O’Malley, who leads the JGI’s Sequencing Technologies group. DAP-seq allowed the team to …
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
… DNA are close to our JGI hearts, we’re highlighting genomic science research that feels especially relevant to living on … are there.  ALISON:  Those invertebrate species include mayflies and the caddisflies, which are of keen interest to … to level off. And that’s in a single lifetime, right? Or maybe two generations. And so, you know, and the real …
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New and Improved: Eucalyptus Reference is Now Accessible
… to support targeted tree breeding for the bioeconomy.   The Science Researchers report a new reference genome for … South African team collected the plant tissues. DNA and RNA sequencing were conducted by the JGI, along with genome … and 2014 diploid genome reference was visualized with GENESPACE, a computational tool for comparative genomics.   With …
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … across various terrains, and microbial life adapted to extreme conditions studied through the Antarctic Lake … work with biotechnology companies including the bioeconomy space, trying to explore whether we can leverage this model …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… community involved in a bioremediation effort. The Science In 1999, the Environmental Protection Agency … down PCE into the chemical compound ethene. Applying genome sequencing and analysis, the researchers identified other … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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Silver age of GOLD introduces new features
… 25 years as a vital resource for data contextualization The Science Since its launch 25 years ago, the  Genomes OnLine … genomics analysis initiatives. GOLD not only curates sequencing projects carried out at the U.S. Department of … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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