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Expanding Virophage Diversity
… DNA genomes that co-infect eukaryotic cells along with giant viruses. Virophages are small viruses with … DNA genomes that co-infect eukaryotic cells along with giant viruses. Almost all known virophage genomes share only four genes in common: major and minor capsid proteins …
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
… In April 2020, we mark both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As both Earth and DNA are close to our JGI … of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy generation and environmental …
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Enlarging Windows into Understanding Gene Functions
… JGI innovates protocol revealing how genetic variations in sequences affect traits. In a text file, the rows of … G appearing over and over in a dizzying array of combinations, are unremarkable, save perhaps for the absence of all … Capability DAP-seq allows researchers to identify all the sites where transcription factors bind quickly and …
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Disclaimer
… NOTICE Information from this server resides on a computer system funded by the U.S. Department of Energy. Anyone using this system consents to monitoring of this use by … a particular purpose, or assumes any legal liability or responsibility for the accuracy, completeness, or usefulness of …
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RECAP: Multi-Omic Journeys with 2023 JGI Annual Meeting Keynotes
… attendees joined the JGI Annual Genomics of Energy & Environment Meeting.  A wide array of invited speakers shared how … in the earth’s soils. While she admits that it “0.25% doesn’t seem like a lot (referring to the abundance of … The  2024 JGI Annual Meeting is set for September 30-October 4, 2024. …
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Capturing the genetic makeup of the active microbiome in situ
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… natural diversity reveals seed dispersal in wild populations for the first time. For years, Elizabeth (Toby) Kellogg … (Danforth Center) drove up and down the highways of the continental United States, occasionally pulling over to the … hundreds of plants have resulted in a paper published October 5, 2020 , in Nature Biotechnology . Kellogg and her …
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Styling for Safety: PPE, It’s the JGI Way
… PPE or Personal Protective Equipment is worn to minimize exposure to … can cause workplace injuries and illnesses.  PPE or Personal Protective Equipment is worn to minimize exposure to … illnesses. These injuries and illnesses may result from contact with chemical, biological, physical, mechanical, or …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… single drop of water could outnumber a small city’s population, the number of viruses in the same drop—the vast majority … to large and even giant. The genomes of giant viruses are on the order of 100 times the size of what has typically … available metagenome datasets generated from sampling sites around the world, including data from several …
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Model Fern Reveals Insight into DNA Thievery in Ferns
… Open Green Genomes hits milestone with C. richardii The Science Fern genomes are huge, and … of fern biology and, more broadly, land plant evolution. Recent findings in Ceratopteris richardii show a long history of dynamic evolution and rapid changes in both … The work conducted by the US Department of Energy Joint Genome …
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The standard operating procedure of the DOE-JGI Metagenome Annotation Pipeline (MAP v.4)
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Toward an Online Repository of Standard Operating Procedures (SOPs) for (Meta)genomic Annotation
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