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Inorganic nitrogen availability alters Eucalyptus grandis receptivity to the ectomycorrhizal fungus Pisolithus albus but not symbiotic nitrogen transfer
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Expression of macromolecular organic nitrogen degrading enzymes identifies potential mediators of soil organic N availability to an annual grass
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… how these hosts and hitchhikers coexist is key for understanding their impact on wider ecosystems, but … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … National Laboratory (Berkeley Lab), as well as publicly available metagenomes, they analyzed both host and …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… shed more light on microbial communities than ever before — especially with the prospect of meta-analyses boosted by AI and Machine Learning — JGI researchers and collaborators work to create FAIR … User Engagement Lead for the DOE Systems Biology Knowledgebase (KBase), as well as researchers from Pacific …
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Webinar: PhycoCosm Tutorial
… Learn more about JGI’s  PhycoCosm data portal , an interactive collection of … calculate self-alignments, usually in the dropdown of available targets on the synteny page. 7.  Q: What is the … CSP? A: Reminder: two calls for proposals are open right now – large scale CSP and FICUS with March 24 and March 17 …
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Gene Expression: From On-Off Switch to Dial
… an all-or-nothing approach to expression, scientists can now opt for various shades of grey. The ability to fine-tune … transferable to other systems, expanding the technologies available for other JGI users outside the realm of bioenergy optimization. … the Camille and Henry Dreyfus Foundation, and the JGI Synthesis Program under FP00005685. In addition, M.D. …
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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
… internship program between the DOE Joint Genome Institute (JGI) and University of California (UC), Merced. What started with 2 interns in the summer of 2014 has grown to a total of 75 with the inclusion … Nathaniel Brown was a 2022 graduate student intern who is now a graduate researcher in Jing Xu’s lab and a teaching …
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Fungal Friends or Foes in Plant Roots
… health and diversity, which can in turn boost yields for both food and for candidate bioenergy feedstock crops. … Similarly, the microbes found in plant roots may have unknown roles. Some plants and fungi have mutually beneficial … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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“A STEM career is in reach and accessible”
… Notes from the Summer 2018 Biotech Partners Interns from Antioch High … higher education and access to fulfilling science careers, JGI hosted five students from Antioch High School this summer. …
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Pinning Down a Piece of Photosynthesis
… and cyanobacteria create the air we breathe and the fuel for food webs as they turn carbon dioxide and water into … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … site that we found in the crystal structure, as far as we know, is a type of metallic protein that no one’s ever had a …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
… In the summer of 2015, Adam Session was a postdoc working at the … appointment with the University of California, Berkeley. Nowadays, Session is an Assistant Professor at Binghamton … Session and Rokhsar, building on work with former JGI postdoc Jarrod Chapman, developed a method to correctly …
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Conserved unique peptide patterns (CUPP) online platform 2.0: implementation of +1000 JGI fungal genomes.
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