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Virus Discoveries that Keep Getting Bigger
… isolated viruses in eukaryotic  microbial hosts. Lately, researchers have used culture-independent approaches to gain … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … approach for giant virus genomic discovery.  In 2020, a JGI-led team used this approach to deliver novel viral …
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Leo Baumgart
… binding sites and which has been applied to a wide range of JGI user science projects spanning bacteria, fungi, and … at the level of individual cells across diverse plant tissues. Dr. Baumgart focuses on expanding functional … et al. "Supporting FAIR Scientific Workflows with the JGI Analysis Workflow Service (JAWS)." In 2025 IEEE …
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Systems (LRC) in Menlo Park, Calif. In the June 24, 2022, issue of the journal Science, Volland and colleagues, including researchers at the JGI and Berkeley Lab, LRC, and at the …
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CSP Functional Genomics
… function.  The emphasis is on projects leveraging JGI’s Biodesign and ‘omics capabilities to enhance … without the capabilities and expertise available at the JGI. Proposals to this call may be submitted to the JGI at any time using a simple web-based form and are …
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Emiley Eloe-Fadrosh
… Dr. Eloe-Fadrosh joined the JGI in 2014 to pursue her research interests in microbial … uncultivated microbes and viruses. Prior to joining the JGI, she was a Bioinformatics Program Fellow at the Gordon … Eloe-Fadrosh is the Metagenome Science Program Head at the JGI. Click to learn more about the program's areas of focus, …
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Informatics Advisory Committee
… The IAC is chartered by the JGI Chief Informatics Officer (CIO) and reports to the JGI Director. The IAC is chartered to render advice, … the effective management and strategic objectives for the JGI’s data science, informatics and information technology …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… of meta-analyses boosted by AI and Machine Learning — JGI researchers and collaborators work to create FAIR datasets … context to get people thinking and tackling some of the issues. It was really productive,” he said.  Data reporting … Biological and Environmental Research (BER) missions. The JGI provides integrated high-throughput sequencing and …
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Scaling Up Existing Skill Sets
… Over the course of the summer, the JGI-UC Merced Genomics Internship paired six UC Merced students with seven JGI researchers for bioinformatics internship opportunities …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… The U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … heavily invested in being the bridge to help scientists and researchers achieve their analysis goals. Offering this tool establishes the JGI as a leader in single-cell genomic amplification at a …
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When “The Blob” Made It Hotter Under the Water
… on marine microbial communities. The Science A team of researchers tracked the impact of a large-scale heatwave … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … nutrient flux in marine microbial communities. Using the JGI-generated data, Sachia Traving, a former postdoctoral …
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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
… Every year, the JGI sequences around 35,000 samples — from plants, algae, … — to support scientists around the world. Most of those researchers send their samples in from afar, without ever … the sequencing lab. So today, Chris Daum walks through the JGI’s sequencing pipeline, where there are freezers with …
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CSP New Investigator Call
… is for investigators and research initiatives new to the JGI. Projects must be independent of ongoing JGI proposals, and lead PIs cannot have been lead PI on any previously accepted JGI CSP or FICUS proposal.   Competitive projects will … Proposers are encouraged to review the JGI’s sample requirements . Samples that are not available …
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