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HaploCharmer: a Snakemake workflow for read-scale haplotype calling adapted to polyploids
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Tour the IGB
… of the IGB, home of the DOE Joint Genome Institute. To navigate virtual tours of each floor, click and drag to look … zoom in and out. 1st floor 2nd floor 3rd and 4th Floors The JGI mural on the 3rd floor whimsically references dozens of iconic JGI contributions to advancing the frontiers of …
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Analyze Data
… The JGI supports the entire data life cycle — from experimental design to reuse. Armed … research community.   We have two key priorities:  The JGI is involved in efforts to integrate data in support of … Chief Informatics Officer …
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Examples: Successful LOIs & Submissions
… as well as successful submissions to our CSP New Investigator, CSP Functional Genomics, and Facilities Integrating Collaborations for User Science calls. These documents have been … RNA-seq and metabolomic insights in lignin biosynthetic pathway edited populus …
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Offerings & Capabilities
… The central mission of the JGI’s Genomic Technologies department is   ensuring users … capabilities to help advance their science by generating data in three overarching categories: DNA Sequencing , … amenable to statistical analysis. To meet these needs, the JGI deploys state-of-the-art sequencers and platforms …
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University of California, Merced Internship Program
… Originally conceived as a UC Merced graduate student summer research experience at the JGI, the Genomics Internship Program soon expanded to … students have contributed to the research of numerous JGI scientists. Interns say their experiences allowed them …
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Low-abundance populations distinguish microbiome performance in plant cell wall deconstruction
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VirJenDB: a FAIR (meta)data and bioinformatics platform for all viruses
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Bioenergy sorghum stem density increases threefold following internode elongation due to continued accumulation of lignified cell walls and complex regulation of genes involved in cell wall biosynthesis
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Access to Rock Star Scientists
… Through the JGI-UC Merced Genomics Internship, graduate students Candace Cole, Mo Kaze, Akshay Paropkari, … of the internship program. Candace Cole, UC Merced JGI Mentors : Ben Cole & Axel Visel, Genomics of …
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Outreach Stories
… Interested in reading more JGI intern and mentor success stories? Read more below. …
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High-resolution genetic mapping of allelic variants associated with cell wall chemistry in Populus
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