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User Support Analysis Group
The User Support Analysis group provides computational analysis for new technology development and JGI user science projects. We perform analysis for diverse …
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Ben Bowen
… developing high-performance computing workflows and integrating mathematics and chemistry for advanced analysis, modeling, … Leadership and Development Program Awardee 2005-2009: NIH K25 Mentored Career Development awardee 1998-2003: NSF …
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Understanding Wildfire Recovery, Starting in Soil
A metagenomic look at the soil microbes present a year after a wildfire. The … better understanding of a recovering soil microbiome provides a window into how to model and track the forest … and growth.  This study builds on the pyrophilous fungi the JGI has previously sequenced , and provides a powerful …
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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
Every year, the JGI sequences around 35,000 samples — from plants, algae, … the sequencing lab. So today, Chris Daum walks through the JGI’s sequencing pipeline, where there are freezers with …
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The More the Merrier: Making the Case for Plant Pan-genomes
… merrier,” with respect to their genomes. In their base state, they are diploids with two genome copies, one from each … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … . Typically, pan-genomes are much larger than any individual genome highlighting the fact that the genetic …
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Evidence for the widespread distribution of CRISPR-Cas system in the Phylum Cyanobacteria
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Evidence for H2 consumption by uncultured Desulfobacterales in coastal sediments
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Marine Proteobacteria metabolize glycolate via the β-hydroxyaspartate cycle
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A Step Toward Controlling Soybean Rust
The United States  is the world’s leading soybean producer , and soybeans … to counter soybean rust disease. Soybean itself is a  JGI Flagship plant genome , and JGI  published its genome … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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Improved-high-quality draft genome sequence of Rhodococcus sp. JG-3, a eurypsychrophilic Actinobacteria from Antarctic Dry Valley permafrost
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Complete genome sequence of the haloalkaliphilic, obligately chemolithoautotrophic thiosulfate and sulfide-oxidizing γ-proteobacterium Thioalkalimicrobium cyclicum type strain ALM 1 (DSM 14477T)
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Effects of sample treatments on genome recovery via single-cell genomics
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