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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… Sequencing technology has changed dramatically over the last  25-plus years since the JGI’s inception, making it possible for researchers to get a close look … ecologist and JGI user Trina McMahon has been sampling microbes at Lake Mendota, which borders the University of …
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Robert Bowers
… Bob uses single-cell genomics and metagenomics to explore how microbes influence people and the environment. This includes studying the diversity, physiology and …
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Enlarging Windows into Understanding Gene Functions
… JGI innovates protocol revealing how genetic variations in … between genomes of different species. This can provide insights into how they orchestrate sets of genes to execute … of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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Better Genome Editing for Bioenergy
… part of CRISPR-Cas9 technology to enable improvements in microbial oil production. The Science CRISPR-Cas9 is a powerful, high-throughput … and genes that lead to increased lipid production. These insights into  Y. lipolytica biology and lipid metabolism … under grant  N00014-15-1-2785 . JW acknowledges additional support from the National Science Foundation Graduate …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… Bacterial enzymes play second fiddle to those from fungi when it comes to breaking … nitrogen-metabolizing enzymes are abundant, and to which microbes they belong. This study provides further insights into the microbial involvement in carbon and … This work was supported by the Czech Science Foundation (18- 25706S and 20-02022Y), by the Ministry of Education, …
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Forest Fungi, Seagrass, and a New View of Symbiosis
… Three stories of JGI-supported research, connected to nutrient cycles. Francis Martin and Lucas Auer discuss their work on communities of … Joy looks into seagrass meadows' carbon sequestration with insights from Adam Healey and Xiao Ma. And Karen Serrano and …
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Webinar: MycoCosm Tutorial
… Learn more about JGI’s  MycoCosm data portal , an interactive collection of sequenced fungal genomes, omics data and comparative analysis tools. Questions and Answers 1.  Q(uestion): Do you accept oomycetes to … of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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Webinar: PhycoCosm Tutorial
… Learn more about JGI’s  PhycoCosm data portal , an interactive collection of sequenced algal genomes, omics data and comparative analysis tools. Questions and Answers 1.  Q(uestion): Why would your Tree ever … of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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A More Intuitive Phytozome Interface
… Highlighting the latest interactive version of the JGI’s plant data portal. On August 6, 2021,  version 12 of Phytozome will be retired, … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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Hiroshi Otani
… Since joining the DOE Joint Genome Institute in 2016, Dr. Otani has been studying secondary metabolism in microbes, particularly actinomycetes. His research activity … BS, Engineering, Tokyo Institute of Technology Master's, Biotechnology, … H, Mouncey NJ. RIViT-seq enables systematic identification of regulons of transcriptional machineries. Nat Commun. …
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A Grass Model to Help Improve Giant Miscanthus
… Miscanthus  sequence offers insights into benefits of polyploidy and perenniality. The … chromosomes of Miscanthus arose by ancient hybridization (polyploidy) and insights into the dynamics of gene … DOE Center for Advanced Bioenergy and Bioproducts Innovation, which is supported by the U.S. Department of Energy, …
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How to Target a Microbial Needle within a Community Haystack
… A workflow for capturing the genetic make-up of specific uncultivated microbes from complex environmental samples. The Science A team led by researchers at … The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, …
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