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Brachypodium as an emerging model for cereal–pathogen interactions
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Graduate Students Get Thesis Research Opportunity at the JGI
… Twice a year, the DOE Office of Science Graduate Student Research (SCGSR) program … selected to carry out part of their thesis research at 12 host national laboratories or facilities between 3-12 … of microbial communities in wetland carbon cycling and the interactions of plants with their associated microbiomes. …
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Mcr-dependent methanogenesis in Archaeoglobaceae enriched from a terrestrial hot spring
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Model Fern Reveals Insight into DNA Thievery in Ferns
… — making it difficult to grasp a deeper understanding of fundamental aspects of fern biology and, more broadly, … Recent findings in Ceratopteris richardii show a long history of dynamic evolution and rapid changes in both … gene duplications, and even more ancient gene transfers from bacteria have all armed the plant with an array of …
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You Can Move, But You Can’t Hide
… to replicate themselves and spread from cell to cell. Two of the most common forms of MGEs are viruses and plasmids. … into Earth’s ecosystems, researchers must examine the interactions that happen between tiny organisms (microbes) … ecosystems by killing other cells. Over time, MGEs can help microbes gain a competitive edge within an ecosystem. …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… (CSP) . This includes mass spectrometry-based measurements of primary and secondary metabolites from plants, … molecules exchanged between plants and microbiomes during interactions? Is it reliable performing an untargeted … yes, we are based in South Africa, How can this team be of help to us in research design and execution? A:  Human …
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The “Most Wanted” Taxa from the Human Microbiome for Whole Genome Sequencing
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Taking Stock of the Known and Unknown Microbial Space
… in sequencing technologies have led to an abundance of microbial genomes becoming available to the global … cycles. The information gained from understanding the interactions between microbes, hosts, and their environments could be applied to multiple … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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Secrets of the Needles: What Microbes do on Conifer Leaves
… Novel study looks at microbiomes in aerial surfaces of plants and their roles in plant health and environmental … including resilience to stress, decomposition, and interactions between forests and the atmosphere. The team … community composition varied across both sites and host tree species, with geographic site exerting the …
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Webinar: PhycoCosm Tutorial
… JGI’s  PhycoCosm data portal , an interactive collection of sequenced algal genomes, omics data and comparative … and Answers 1.  Q(uestion): Why would your Tree ever differ from NCBI Taxonomy? A(nswer): If you find that our trees are … thus defined. We also have some reference plant genomes to help with comparative studies of algae and we have various …
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A Sorghum Pangenome Opens More Doors to Discovery
… Leveraging decades of technological development, dozens of reference genomes and thousands of resequenced sorghum … Danforth Plant Science Center. Collaborators benefitted from sequencing resources as part of the Community Science … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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The Mutualist Laccaria bicolor Expresses a Core Gene Regulon During the Colonization of Diverse Host Plants and a Variable Regulon to Counteract Host-Specific Defenses.
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