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Virus-Microbe Interactions of Mud Island Mangroves
… University of Texas at Austin, will defend his dissertation. Some of his research was conducted at the JGI through the DOE Office of Science … wetlands in south Texas,” he explained. “In terms of my project, I wanted to incorporate that CSP, but also look at …
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A More Intuitive Phytozome Interface
… Highlighting the latest interactive version of the JGI’s plant data portal. On August 6, 2021,  … genomes and has been under active development for over 5 years, provides users with the genome browsers, gene pages, … possible given the finite staff available to the Phytozome project. What will happen to Phytozome v12 URLs after August …
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DOE JGI Interns Share Their Summer Experiences
… the field, work at the lab bench, and also do some computational analyses at their desks. As part of the DOE JGI’s efforts to promote diversity and inclusion in the sciences, among the interns were two undergraduate … worked with Zhong Wang’s group on an aspect of the same project assigned to Sharon and Cristhian; and, Lizhen Shi , …
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JGI & KBase at PAG XXVII
… The Plant and Animal Genome XXVII Conference (PAG) takes place January 12-16, 2019, in San … Genome Institute (JGI) and the  DOE Systems Biology Knowledgebase (KBase) will be at Booth 509. Stop by and chat with … science opportunities. Learn how to apply for a project with the JGI Community Science Program, and how you …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… Congratulations to US Department of Energy (DOE) Joint Genome Institute (JGI) staff scientist Simon Roux , who was recently selected as the 2025 recipient of … as part of the Early Career Research Program (ECRP). His project, “Characterizing Virus-Driven Alterations of …
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
… In April 2020, we mark both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As … University in Fort Collins. He’s part of a JGI-supported project studying the world’s rivers and their microbial … and it has legacy mining that goes back more than 100 years. And in particular, there’s an inflow from the mining …
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At the Forefront of Terrestrial Virus Research
… Rich and Matthew Sullivan. He shared a few thoughts on his summer at JGI through a program that provides …
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Accelerating Metagenomics Discoveries with Deep Learning
… On July 6, scientists from Lawrence Berkeley National Laboratory (Berkeley Lab) and other institutions shared their works-in-progress with 86 participants in … of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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2021 JGI Proposal Call Brings New Investigators into Community Science Program
… Accepted proposals emphasize JGI interests in algae and secondary metabolites. A total of 27 proposals have been  … analyze and distribute data through the  DOE Systems Knowledgebase (KBase) , a free, open source data science platform … through the  CSP New Investigator call . It is the first project to have successfully evolved into a full-scale …
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Better Genome Editing for Bioenergy
… technology to enable improvements in microbial oil production. The Science CRISPR-Cas9 is a powerful, high-throughput … at a genetic level, how does  Y. lipolytica work? The project was a multi-institutional effort led by … four genes, including one with no prior known function. The project’s success demonstrates how to sharpen the …
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… This webinar focused on how the JGI employs single-molecule, long-read DNA … analysis of microbial, fungal, and plant research projects.  More recently, these long-reads have been applied … assemblies by JGI and uploaded to IMG? A:  Depending on the project setup, we can include as part of our data analysis …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… recognize that crop varieties grow best in certain regions. Most plant species have adapted to their local … fellow in the Juenger lab and continues to work on the project from a lab at Michigan State University that is … up these gardens, we have them to study for a number of years. And that’s a real benefit for the research program.” …
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