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Len Pennacchio
Enhancers VISTA Cardiac Enhancer Browser ENCODE FaceBase … 2021-  NLM Board of Regents Working Group on “NIH Comparative Genomics Resource” 2021-  Co-Chair, “Advances in Genome Biology & Technology- Agriculture” 2021-  Weill Neurohub Investigator 2020   Elected Fellow of …
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Water mass age structures the auxiliary metabolic gene content of free-living and particle-attached deep ocean viral communities
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The Surprising Structure of a Shrub Willow Sex Chromosome
… distinguish males and females even when plants with multi-year generation times are young and haven’t physically … Foundation of China (31590821, 31561123001, 31500502, 41871044), National Key Research and Development Program of China (2017YFC0505203, 2016YFD0600101), and the National Key Project for Basic Research …
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A Collaboration to Improve Plant Genome Annotations Across Species
Atlas in  Nucleic Acids Research . The project spans 15 years and involves more than 17 research groups. The team … Having a better handle on the gene function helps identify the molecular targets for plant improvement. … Avinash: In the initial planning phase, there were about 10 groups that came together to standardize the experimental …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… we also hoped to use this unique opportunity to quantify how transitions to higher ploidy could be generating … (in this case, a plant’s complete genetic makeup) and 10 common gardens. We discovered that 8X populations have …
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Ray Turner Completes Last Tour of Lab Duty at JGI
For the last 15 years, Ray Turner has been one constant for the Joint Genome … Naval Commander retires from Berkeley Lab. For the last 15 years, Ray Turner has been one constant for the Joint Genome … Ray oversaw the acquisition and renovation of Building 310, adding the crowning piece of the entire 80,000 square …
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Does time matter? Intraspecific diversity of ribosomal RNA genes in lineages of the allopolyploid model grass Brachypodium hybridum with different evolutionary ages
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… are.” But according to a new study published September 16, 2021 in Nature Communications , warmer waters and … they sequenced DNA ‘marker’ gene sequences to identify the microbes. And in order to determine what genes the …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… diatoms and kelp. Dubbed Phytopthora ramorum (pronounced: Fy-TOFF-thor-uh ra-MOR-um) the genus in Latin translates to … disease and how to control them. Despite advances in the years since this landmark publication, SOD continued to … pathogenesis . Science. 2006 Sep 1;313(5791):1261-6. doi: 10.1126/science.1128796 Science News of the Day: Stokstad E. …
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
… of Duisburg-Essen (UDE), Germany with the aim of intensifying collaborations in the fields of genomics, structural … space that has resulted in many impactful papers in recent years, but are also looking forward to jointly expanding …
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
… comprehensive learning experience.” Over the course of the year, she and other JGI staff conducted several real-time, … publication in a reputable scientific journal. It was gratifying to see the empowerment displayed across each of their … considers the experience the highlight of her past year’s work at the JGI. As the students look forward to …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… to analyze samples from one experiment. Starting a  few years ago, researchers can request quantitative SIP analysis … and Reusability) for data reuse.  In the last year, JGI’s user community has helped propel multiple … of his lab, Abigayle Simpson. They found that although 20 years of SIP experiments have generated plenty of insights, …
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