Search

… a similar type of search in microbial and metagenomic databases. In this case, the machine “learned” to identify a … and his colleagues developed first worked on a reference dataset that included genome sequences known to be … of phage-bacterial coevolution and are also useful tools in CRISPR-Cas applications, but we are limited in our …

… and skill development while curating reusable microbiome data. Undergraduate educators are partnering with the JGI … in laboratory techniques through hands-on experiments and data analysis. Starting with isolating and identifying fungi … in parallel. While KBase does not currently have all the tools for complete processing and analysis of fungal data, …

… Joint Genome Institute (JGI) provide access to a variety of tools that leverage stable isotopes to measure carbon and … with. 2. Q: What would a typical turnaround time be for data once samples are in hand at JGI? A: It takes a few …

… Software …

… ecosystem,” said Salamov, one of Wint’s mentors and a data scientist at the JGI. Previous studies were conducted … predictor of gene expression levels using machine learning tools. “This was very exciting to see how Rhondene not only … the research question and applied it to such a large data set, but also went all the way through to convert her …

… sequenced without pooling, which yields ~ 180 Gb of data per library. Q: How much DNA/coverage is required for … Methylation detection currently only works using subread data, PacBio is working on support to use CCS data as input. Data analysis Q:  What types of analysis …

… Community Science Program , allows us to work and share our tools with a widening circle of researchers whose work …

… Cas14 proteins discovered from JGI’s IMG/M database and biochemically characterized at UC Berkeley and … DNA (ssDNA). The discovery was made possible by mining the datasets in the Integrated Microbial Genomes and Microbiomes (IMG/M) suite of tools managed by the U.S. Department of Energy (DOE) Joint …

… call recommended including plans to analyze and distribute data through the  DOE Systems Knowledgebase (KBase) , a free, open source data science platform that allows users to explore data and … thousand Actinobacteria strains and then use computational tools to analyze biosynthetic gene clusters and then develop …

… or DRI for short.  A kaleidoscope of structure-function data To study DRI experimentally, Blaby-Haas, Grosjean and … Scientists at Stanford’s SSRL were able to provide crucial data supporting the presence of the zinc-mirror heme site — … loses this protein, energy metabolism is disrupted. These data create a multilayered understanding of this Domain …

… high value to establish models and hypotheses, experimental data is critical to further test such hypotheses. In …

… Community Science Program , allows us to work and share our tools with a widening circle of researchers whose work …