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Next generation sequencing and bioinformatic bottlenecks: the current state of metagenomic data analysis
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Gene Context Analysis in the Integrated Microbial Genomes (IMG) Data Management System
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MycoCosm, the JGI’s Fungal Genome Portal for Comparative Genomic and Multiomics Data Analyses
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The IMG/M data management and analysis system v.7: content updates and new features.
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Statistical analysis of feature-based molecular networking results from non-targeted metabolomics data
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MycoCosm Tutorial
… Learn more about MycoCosm, a data portal with over 2,000 fungal genomes and multi-omics datasets, equipped with interactive web-based tools for comparative genomics and community annotation. …
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Mike Sneddon
… Dr. Sneddon is the Advanced Analysis Group Lead in the Data Science and Informatics Department at the Joint Genome … team of engineers and scientists builds and operates the data and compute platforms and bioinformatics annotation pipelines that support JGI’s portals, tools, and the DOE’s emerging AI-enabled capabilities for …
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Extracting the Secrets of Secondary Metabolites
… has historically been limited due to the lack of robust tools available for carrying CRISPR into microorganisms. … of interest. Using CRAGE to domesticate target microbes, users of the U.S. Department of Energy (DOE) Joint Genome … monitor loss- and gain-of-function. The study’s analytical data shows peaks and valleys in secondary metabolites as …
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Natural Prodcast Episode 1: The Primer, Part 1
… Genome Institute, or JGI. JGI is a DOE Office of Science User Facility located at Lawrence Berkeley National … so now here at the JGI, I work with all of the sequencing data that the JGI produces to try to find and identify … I kind of see it. DAN: So what we’ve got here is, I just grabbed a photo of a “biochemical pathways” chart. So if you …
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Twenty-five years of Genomes OnLine Database (GOLD): data updates and new features in v.9.
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Silver age of GOLD introduces new features
… The JGI’s Genomes OnLine Database celebrates 25 years as a vital resource for data … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … of the significant challenges in maximizing genomic data usage is having the appropriate contextual information, or …
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Dealing with Drought: Uncovering Sorghum’s Secrets
… Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … 400 root and leaf samples and helped analyze the sequencing datasets. The results from the first year showed that 10,727 … stress. The first year’s results will be compared to data from additional years of sampling, which are currently …
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