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Who We Are
…   The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a national user facility located at … The JGI consists of 225 researchers and support staff in the Integrative Genomics Building in Berkeley, … from plants, fungi, algae, non-medical microbes, microbial communities, and other relevant organisms. We …
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MGM Workshop at Fisabio Summer School 2025
… research, the health sciences and related fields who are interested in learning and sharing concepts, tools and research results … will be devoted to training in the use of the Integrated Microbial Genomes & Microbiomes (IMG/M) system, presented by …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… available through the  Community Science Program (CSP) . This includes mass spectrometry-based measurements of … Q:  Any advice on normalizing metabolomic data from a whole microbial community, without having cell counts or … typically use a measure of biomass, e.g. wet weight, total carbon analysis of the biomass, etc. Q:  If we have only the …
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MGM Workshop at Fisabio Summer School 2026
… research, the health sciences and related fields who are interested in learning and sharing concepts, tools and research results … will be devoted to training in the use of the Integrated Microbial Genomes & Microbiomes (IMG/M) system, presented by …
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An Automated Tool for Assessing Virus Data Quality
… genomes . The Impact The microbes that play key roles in cycling nutrients such as carbon, nitrogen and sulfur are themselves regulated by … the genomes of these viruses and associate them with their microbial hosts. However, assembling viral genomes from … The work conducted by the U.S. Department of Energy Joint Genome Institute is supported by the Office of Science …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… Meta-omics datasets show that CRISPR-Cas systems determine mutualism or parasitism between some archaeal hosts and … crust, there is a vast ecosystem connected to the global carbon cycle. Archaea are key players in this deep … organisms feeds into a better understanding of nutrient cycling across the planet. Summary To understand more about …
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Genomic properties of Marine Group A bacteria indicate a role in the marine sulfur cycle
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Emiley Eloe-Fadrosh
… Dr. Eloe-Fadrosh joined the JGI in 2014 to pursue her research interests in microbial ecology and metagenomics. Her current research … of Maryland School of Medicine and her graduate work in microbial oceanography at Scripps Institution of … to learn more about the program's areas of focus, major initiatives and more.  …
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Triggering Morel Fruiting
… Hao Tan from the Sichuan Academy of Agricultural Sciences in China and involving Francis Martin from the Institut … delicacy, but also because they influence geochemical cycling in forest ecosystems. By deciphering the … revealed a striking capability of morel mycelium to acquire carbon from lignocellulosic-abundant matters such as plant …
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Tracing the Evolution of Shiitake Mushrooms
… New genomes highlight the diversity of white rot fungi in the genus Lentinula   The Science Shiitake mushrooms get … Additionally, these fungi play a role in the global  carbon cycle . As decayers, Lentinula fungi access carbon … sequencing were enabled by the Community Science Program (CSP) at the U.S. Department of Energy (DOE) Joint Genome …
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Alabama Agricultural & Mechanical University Internship Program
… 2024 was a year of firsts, including the flagship internship program between Alabama Agricultural & Mechanical …   Internship Snapshots …
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Depth-discrete metagenomics reveals the roles of microbes in biogeochemical cycling in the tropical freshwater Lake Tanganyika
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