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A Grass Model to Help Improve Giant Miscanthus
… National Laboratory (Berkeley Lab), and collaborators across Europe and Asia. CABBI partners include the … Understanding the evolution of polyploidy, and how genomes respond to extra chromosome and gene copies, will … Miscanthus breeding programs. The team also sequenced genomes of numerous wild Miscanthus lineages to better …
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Learning to Look
… a computer could use to conduct a similar type of search in microbial and metagenomic databases. In this case, the … are filamentous viruses with small, single-stranded DNA genomes and a unique chronic infection cycle. “We’re not … virome associated with nearly all bacterial phyla across virtually every ecosystem.” By significantly …
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Three Join the JGI User Executive Committee
… Soil Microbiome SFA. She serves as Secretary within the Microbial Ecology Section of the Ecological Society of … on review panels for the JGI Community Science Program (CSP) proposals. He  brings experience representative of the … to her early career success, and is currently a PI for both CSP New Investigator and large-scale CSP projects. Wilbanks …
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SPRUCE-ing Up Science
… of biology and computer science, to reveal clues about how microbial and bacteria communities influence the … peat moss and their subsurface bogs hold over 30% of the world’s carbon. “This makes it one of the most efficient … complex things … they really just help get your point across as quickly as possible,” he said. After years of …
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The Integrated Microbial Genome Resource of Analysis
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A Comparison of Microbial Genome Web Portals
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IMA genome-F18
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… C. Villada, Ecology & Evolution of Self-Catalytic Introns across Earth’s Microbiomes Sonia Vargas and mentors Tomas … and Exploring Novel BGC Detection Techniques on Fungal Genomes Video Transcript: Emerald Nash : What I’m working on … that I got to do a project involving over 12,000 fungal genomes was just really, really exciting for me and learning …
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Frederik Schulz
… user community and supports various user projects in the Microbial Program. In an LDRD-funded project, Dr. Schulz … Molecular Microbiology, University of Vienna (Austria) PhD Microbial Ecology and Bioinformatics, University of Vienna … Nature Biotechnology 39, 499-509. Schulz et al. (2020) Giant virus diversity and host interactions through …
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Rex Malmstrom
… genomics pipeline that provides JGI users access to the genomes of uncultured microbes.  His group also handles the … that reveals in situ functional activities of specific microbial groups within complex communities.  The Microscale …
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Expanding Virophage Diversity
… Virophages are small viruses with double-stranded DNA genomes that co-infect eukaryotic cells along with giant … Virophages are small viruses with double-stranded DNA genomes that co-infect eukaryotic cells along with giant … available metagenomic datasets in JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) data suite—which …
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Recent Activity in Expanding Populations and Purifying Selection Have Shaped Transposable Element Landscapes across Natural Accessions of the Mediterranean Grass Brachypodium distachyon
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