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JGIota: Looking Back at How Cow Rumen Samples Landed on a Syllabus
… how they’d used metagenomics to identify over 27,000 microbial genes. The data from that study is now used across California State University campuses for …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… team surveying the genomic and phenotypic diversity across the natural range of switchgrass found that … naturally occurring ploidy levels, called cytotypes, across the species. These are primarily tetraploids (4X or … we contrasted the diversity of 4X and 8X switchgrass across hundreds of naturally-occurring genotypes (in this …
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An Automated Tool for Assessing Virus Data Quality
… recovered and identified from environmental samples (metagenomes). However, the quality and completeness of … the genomes of these viruses and associate them with their microbial hosts. However, assembling viral genomes from … a total of 44,652 complete or near-complete viral genomes across both datasets, separating these from the vast …
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Virus-Microbe Interactions of Mud Island Mangroves
… worked with the JGI through a Community Science Program (CSP) proposal, and Rambo’s research builds on that. “The … Rambo’s work was overseen by Susannah Tringe, head of the Microbial Systems group. He also worked with Simon Roux and … experience was “an ideal opportunity for me to get real-world experience.” As he finalizes his dissertation, he …
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JGI@25: Mapping Switchgrass Traits with Common Gardens
… crop. In 2018, the JGI had sequenced and assembled the genomes of two varieties of a close relative and model … of common switchgrass gardens to track crop productivity across 1,100 miles and eight states. In 2021, using … switchgrass has become an important species whose complex genomes are helping breeders understand how they can boost …
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Expanded diversity of microbial groups that shape the dissimilatory sulfur cycle
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Microbial species delineation using whole genome sequences
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Improving Microbial Genome Annotations in an Integrated Database Context
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The DOE-JGI Standard Operating Procedure for the Annotations of Microbial Genomes
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Abiotic selection of microbial genome size in the global ocean
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Finding the Fermenters
… browser that allows other researchers to study the genomes and predict the metabolic abilities of these … GOLD and IMG data portals to get information about the genomes and genes of the organisms on the list. They also … the phenotypic records of 8,350 organisms along with 4,355 genomes and 13.6 million genes. The results reveal that …
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A Natural Mechanism Can Turbocharge Viral Evolution
The first step in the deadly dance between a virus and microbial cell is an embrace. For a virus with a “head-tail” … ago, a team discovered a group of viruses that had in their genomes a surprising tool: a “diversity generating … DE-AC02-05CH11231 through the Community Science Program (CSP), the G. Unger Vetlesen and Ambrose Monell Foundations, …
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