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Ian Blaby
… view to developing a deeper understanding of sequence-based gene function. … B.Sc. (HONS) – University of Wales, Cardiff, Genetics Ph.D. – University of Cambridge., Microbial … learning approach to reveal the functional links between gene networks. BMC genomics. 20:12. 2019 Anderson et. al., …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… SIP allows researchers to go beyond understanding which microbes are present in a sample, to generate data about which organisms are active, and which … process to carry out the onerous SIP sample processing. Generating these datasets opens up the possibility of new …
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Recent Activity in Expanding Populations and Purifying Selection Have Shaped Transposable Element Landscapes across Natural Accessions of the Mediterranean Grass Brachypodium distachyon
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JGI@25: Mapping Switchgrass Traits with Common Gardens
… will help solve energy and environmental challenges. Switchgrass is a native, shrubby grass that can grow … 2007, the JGI has been working on identifying switchgrass genes related to biomass production, drought tolerance, and … make it a viable candidate bioenergy feedstock crop. In 2018, the JGI had sequenced and assembled the genomes of two …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… Fashioning DNA outside a cell is key to interrogating what genes do, how they work, and applying them to environmental … through the JGI DNA synthesis Community Science Program (CSP) Functional Genomics, the system allows scientists to … expression in the organism Clostridium autoethanogenum. The microbe can utilize carbon oxides, including the greenhouse …
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Gene duplication, horizontal gene transfer, and trait trade-offs drive evolution of postfire resource acquisition in pyrophilous fungi
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Mining Thermophile Photosynthesis Genes: A Synthetic Operon Expressing Chloroflexota Species Reaction Center Genes in Rhodobacter sphaeroides
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Polar Phytoplankton Need Zinc to Cope with the Cold
… peering into the function and activity of phytoplankton genes and looking at how communities of these microalgae … (Berkeley Lab) through the JGI Community Science Program (CSP) .  Through this collaboration, in 2017, they published … Algal Program makes genomes and multi-omics data from JGI CSP projects publicly available at the PhycoCosm portal . …
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Natural soil microbes alter flowering phenology and the intensity of selection on flowering time in a wild Arabidopsis relative
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Viral dark matter and virus–host interactions resolved from publicly available microbial genomes
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Viruses interact with hosts that span distantly related microbial domains in dense hydrothermal mats
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Three Join the JGI User Executive Committee
… the Ecological Society of America. He’s interested in how microbes influence biogeochemical cycles in soils and sediments and plant-microbial interactions in crops. He has been a PI or Co-PI on five … on review panels for the JGI Community Science Program (CSP) proposals. He  brings experience representative of the …
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