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Micro-Scale Applications Group
… The Micro-Scale Applications group explores the genetic makeup of natural microbial communities using a variety of cutting-edge approaches.  Our group also seeks out new … The JGI uniquely offers the first quantitative Stable Isotope Probing (SIP) … functional assay lets us move beyond cataloging the genes of microorganisms and start making quantitative …
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JGI Scientists Pen Genome Watch Articles
… more to come in 2020. Researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … and metagenome , rather than just by 16S ribosomal RNA gene censuses.  Emiley Eloe-Fadrosh ,  Metagenome Program … a model eukaryote. The wide array of topics comes from the authors’ interests, says Woyke. Their themes just need to …
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FICUS-NERSC/KBASE
… The mission of the Joint Genome Institute is to serve the scientific … relevant bioenergy and environmental problems.  The mission of the National Energy Research Scientific Computing Center … ( NERSC ) is to accelerate scientific discovery at the DOE Office of Science through high performance computing (HPC) …
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Synthetic Biology Lab
… as user facility that aims to provide access to state-of-the-art DNA synthesis and assembly technologies to the … mining and sequence design with scaling the production of large, difficult to synthesize constructs such as those … We also develop methods for efficient QA/QC based on next-generation sequencing technologies including PacBio and …
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Gut Fungi: Unexpected Source of Novel Chemicals
… The Science Anaerobic fungi, which die in the presence of oxygen, dwell in herbivore guts and help them digest … meal. In their evolutionary history, these fungi branched off early from aerobic fungi, which can breathe oxygen — … Swift — verified that the fungi expressed biosynthetic gene clusters, which are “building blocks” of natural …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… (CSP) . This includes mass spectrometry-based measurements of primary and secondary metabolites from plants, … et al.  MAGI: A Method for Metabolite Annotation and Gene Integration . ACS Chem Biol. 2019 Apr 19;14(4):704-714. … samples and test how many they thought would be necessary. Switchgrass has an enormous metabolome, and we wanted to …
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Pinning Down a Piece of Photosynthesis
… By studying the structure and function of a cyanobacterial protein, researchers have new insights … that photosynthesizers share. The end result was a list of genes, termed  The GreenCut2 Resource . It details 597 genes … Scientists at Brookhaven National Laboratory’s NSLS-II used multiple x-ray techniques combined with advanced …
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Novel soil bacteria possess diverse genes for secondary metabolite biosynthesis
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Metatranscriptomic insights on gene expression and regulatory controls in Candidatus Accumulibacter phosphatis
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A Genomic Catalog of Stress Response Genes in Anaerobic Fungi for Applications in Bioproduction
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Duplications and losses in gene families of rust pathogens highlight putative effectors
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Pleiotropic and Epistatic Network-Based Discovery: Integrated Networks for Target Gene Discovery
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