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Fishing for Novel Cellulose Degraders
A “bait and hook” single-cell genomic approach to bioprospecting. The Science One of the most vital pieces of equipment for fly fishing is a boxful of lures. Designed with feathers … a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab). Using a …
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JGI Announces 2023 Community Science Program Awardees
… to the proposers of the 19 proposals selected for the 2023 Community Science Program call of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab). “We’re very …
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Understanding Wildfire Recovery, Starting in Soil
… a wildfire. The Science After a wildfire burns, recovery begins at the forest floor. Within the soil, a microbiome of bacteria, … at Pacific Northwest National Laboratory and Lawrence Berkeley National Laboratory, respectively. The team’s …
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A Collaboration to Improve Plant Genome Annotations Across Species
To provide broad plant genomic capabilities, the DOE Joint Genome Institute works in partnership with the HudsonAlpha Institute for Biotechnology, which specializes in genome improvement … (JGI)*, a national user facility located at Lawrence Berkeley National Laboratory, and add additional gene …
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JGI@25: Using Team Science to Build Communities Around Data
In honor of the JGI's 25th anniversary in 2022, we have … a 2012 Community Science Program proposal. Joseph Spatafora of Oregon State University led the effort to sequence … of Nature Plants . C-fern has a genome approximately three times the size of the human genome. There are four more fern …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab), comes in. The … to better understand a special class of compounds, or secondary metabolites, called terpenes. Terpenes are made … PI on this project. “I view the program as an excellent platform to build collaborative research initiatives.” Yasuo …
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
Journal publication caps JGI pilot project with fledgling Florida high school scientists. The Florida Everglades … a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab), embarked on a … provides the only known reference microbiome data sets for the Loxahatchee Refuge,  was published in the journal  …
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Finding the Fermenters
Harnessing BER-funded data resources, researchers built an … the range of bacteria and archaea that rely on this form of metabolism, researchers recently compiled a list of … a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab), and the DOE …
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Dealing with Drought: Uncovering Sorghum’s Secrets
… genes respond to drought stress. The Science Fields of drooping stalks and cracked earth are becoming common images in … by a growing human population and increasing demand for agricultural products.  Sorghum bicolor (L.) Moench is … researchers from the University of California (UC), Berkeley, UC Agriculture and Natural Resources (ANR), US …
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How Filamentous Fungi Sense Food
Tracing gene regulatory networks in the model fungus  Neurospora … Science A team led by researchers at the University of California, Berkeley used a multi-omics approach to reconstruct and …
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Kjiersten Fagnan
Kjiersten Fagnan began working with JGI in 2012 as a NERSC bioinformatics computing consultant, after completing a petascale … Seattle BA Applied Mathematics University of California, Berkeley MBA Haas School of Business, University of …
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Matt Blow
Dr. Blow joined the JGI in 2009, and currently heads the User Support … the lead of the User Support Analysis group. The group performs custom analysis and develops automated pipelines for … training Wellcome Trust Sanger Institute, UK and Lawrence Berkeley National Lab … Bowers et al. 2024. scMicrobe PTA: …
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