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Metagenomic Sequencing of an In Vitro-Simulated Microbial Community
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A call for standardized classification of metagenome projects
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ShotgunFunctionalizeR: an R-package for functional comparison of metagenomes
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Building on basic metagenomics with complementary technologies
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The Airborne Metagenome in an Indoor Urban Environment
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CoverM: Read alignment statistics for metagenomics.
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… was green millet (Setaria viridis), a small model grass with a short lifecycle that uses a carbon fixation process … of plants have resulted in a paper published October 5, 2020 , in Nature Biotechnology . Kellogg and her colleagues, along with researchers at the HudsonAlpha Institute for …
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First Monoploid Reference Sequence of Sugarcane
… species, sequencing programs generally focus on a genotype with two identical sets of chromosomes to produce a … the team relied on bacterial artificial chromosomes (BACs), vectors that can hold large DNA segments such as an entire … as a reference. The final sugarcane sequence generated is 382 Mb; 25,316 protein-coding gene models were predicted with …
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Development of an integrated transcript sequence database and a gene expression atlas for gene discovery and analysis in switchgrass (Panicum virgatum L.)
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Analysis of 4,664 high-quality sequence-finished poplar full-length cDNA clones and their utility for the discovery of genes responding to insect feeding
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The Mobilome in the Mire
… or MGEs, that can move between organisms. But now, deep sequencing and new analysis methods are bringing this …
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… a new JGI tool more accurately facilitates microbial genome discoveries. Unlocking the intricate details of life’s … language of biology — and primed for integration with artificial intelligence tools.  LLMs aren’t just for … its demand for substantial operational resources.  ”The metagenomics data generated by the JGI are very …
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