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Engagement Webinar: How to Successfully Apply for a CSP Proposal
CSP  New Investigator call for proposals.  Tips: Contact us with your questions ([email protected]) … your proposal idea with JGI staff to clarify key points about JGI’s capabilities, technical feasibility, and … by DOE. Email engage@kbase.us if you have questions about how KBase can support your CSP data. The proposal call …
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Training the Next Generation of Talent
Joint Genome Institute (DOE JGI), a DOE Office of Science user facility, Keedrian Olmstead was back on campus at the University of California, Merced to start … of their internships, and are summarizing their data in a report. “QSB is grateful to the JGI-UC Merced Summer …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements … cow stomach. Rumen – and its microbes – are really a powerhouse. Rumen microbes have the ability to break down hardy … expanded into three other universities. You can learn more about how JGI data supports higher education in this JGIota …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… team led by researchers at the University of Texas (UT) at Austin, the HudsonAlpha Institute for Biotechnology … When viewing the full distribution of switchgrass on a map, these 8X individuals occurred in parts of the … to address long-standing evolutionary ecological hypotheses about how C4 perennial grasses like switchgrass respond to …
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Complete genome sequence and the expression pattern of plasmids of the model ethanologen Zymomonas mobilis ZM4 and its xylose-utilizing derivatives 8b and 2032
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Transcriptomic Data Sets for Zymomonas mobilis 2032 during Fermentation of Ammonia Fiber Expansion (AFEX)-Pretreated Corn Stover and Switchgrass Hydrolysates
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A Complex Confection Decoded: Sugarcane Reference Genome
… the genetic code of sugarcane, researchers were able to map the location of genes that provide resistance to the brown rust disease that can devastate a crop. The Impact In … for the sugarcane cultivar R570 has been generated and  reported in the journal  Nature . The work led by …
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David Goodstein
KLA-Tencor before joining the JGI in 2002. Initially focused on building tools to facilitate expert curation of … PhD in Physics, Cornell University, NY … RJ Craig et al., 2023.The Chlamydomonas Genome Project, version 6: Reference … acids research 51 (16), 8383-8401. JT Lovell et al., 2022. GENESPACE tracks regions of interest and gene copy …
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Rex Malmstrom
… the ocean. Later during his postdoctoral work at the Massachusetts Institute of Technology he developed a high … symbiosis. Nature Plants 10, 673–688 Vyshenska et al. 2023. A standardized quantitative analysis strategy for … probing metagenomics. mSystems 8:e01280-22. Volland et al. 2022.   A centimeter-long bacterium with DNA contained in …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… collection sourced from half of the United States. As  reported January 27, 2021 in  Nature , the team led by researchers at the University of Texas (UT) at Austin, the HudsonAlpha Institute for Biotechnology … the JGI, allowing the research team to conduct association mapping, linking genes to traits. One of the team’s findings …
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Extracting the Secrets of Secondary Metabolites
… combo helps further demystify biosynthetic gene clusters.  The Science Microbial secondary metabolites, those … and other industries — yet there’s still so much about them we don’t know.  Unlocking the power of secondary … cluster. That work by JGI researchers was published April 2022 in Cell Chemical Biology . When it comes to insect …
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JGI Portals
… developments to meet the ever-changing demands of our users. … Download plant, algal, fungal and microbial genomes … tools for comparative genomics of fungi. Mycocosm enables users to navigate across sequenced fungal genomes, and to … generated by the JGI and by others. The web portal allows users to navigate these genomes and conduct comparative and …
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