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Pseudomonas putida to break down biomass and help bring about a more sustainable, biobased economy. They conduct research at the … Institute (JBEI) , a JGI partner and one of the four US Department of Energy Bioenergy Research Centers.  …

… method of traditional shotgun metagenomics. One approach uses fluorescence-activated cell sorting (FACS) to sort … a recent Nature Communications paper, uncovering giant virus sequences in soil for the first time. A second approach … Roux outlines what’s been achieved thus far based on computational predictions, and future directions integrating …

… cow stomach. Rumen – and its microbes – are really a powerhouse. Rumen microbes have the ability to break down hardy … hold clues to how humans could do the same on an industrial scale to produce biofuels . Since one of the … expanded into three other universities. You can learn more about how JGI data supports higher education in this JGIota …

Uri Neri is a computational biologist who spends his days wrangling viral … and analysis, with a particular fondness for RNA viruses – though he'll take a look at anything related to … he can be found trying to convince others that RNA viruses are actually interesting and not just "spicy messenger …

… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … assesses what fraction of the microbial diversity we know about, and proposes a path forward to curate and cultivate … however, the team added that this information is still computationally derived. Experimental studies on cultivated …

Pennacchio joined the DOE Joint Genome Institute and has focused on applying state-of-the-art molecular methods to … Enhancers VISTA Cardiac Enhancer Browser ENCODE FaceBase … 2021-  NLM Board of Regents Working Group on “NIH … in Genome Biology & Technology (AGBT)” … Education … About the Deputy of Genomic Technologies … Selected …

… forest floor. Within the soil, a microbiome of bacteria, viruses and fungi process carbon and nitrogen, paving the way … from a wildfire that burned at the Colorado-Wyoming border, about a year after the fire. They sampled soil across a … … This work was supported through a USDA NIFA award (2021-67019-34608) to M.J.W. FTICR-MS analyses were performed …

… production in other algae that may be more viable for sustainable biofuel production. The JGI published a partial … the project was co-led by Daniel Rokhsar, head of the JGI’s Computational Biology Program, along with JGI Computational … been cited in almost one-fourth (23.8%) of publications focused on that specific algae. The reference genome is cited …

… team led by researchers at the University of Texas (UT) at Austin, the HudsonAlpha Institute for Biotechnology … researcher Joseph Napier from the Juenger lab and computational biologist Paul Grabowski of HudsonAlpha … to address long-standing evolutionary ecological hypotheses about how C4 perennial grasses like switchgrass respond to …

… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, found that the fungus Olpidium is a link in … the effort that led to the work published in Scientific Reports . Before 2006, Olpidium was one of the many obscure … The JGI provides integrated high-throughput sequencing and computational analysis that enable systems-based scientific …

… the world’s rivers and their microbial communities. He’s focusing on the Arkansas River and how microbes might be influencing its health.  He sat down with me to talk about his project, and riffed a bit on what it means in a … The JGI provides integrated high-throughput sequencing and computational analysis that enable systems-based scientific …

… at Argonne National Laboratory. Dr. Kyrpides’ research focus on Microbiome Research with an emphasis on Microbiome … bacteriophages. Cell . 185(21):4023-4037 Nayfach S, et al. (2021) Metagenomic compendium of 189,680 DNA viruses from the human gut microbiome. Nat Microbiol . …