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A Collaboration to Improve Plant Genome Annotations Across Species
… specific conditions – in over a dozen plants. To learn more about the project, HudsonAlpha’s Research Communication … It was developed to improve plant genome annotations at the US Department of Energy (DOE) Joint Genome Institute (JGI)*, … Faculty Investigator Jeremy Schmutz is the Plant Program Lead at the JGI. Sarah:  Why is a resource like this …
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Understanding Wildfire Recovery, Starting in Soil
… forest floor. Within the soil, a microbiome of bacteria, viruses and fungi process carbon and nitrogen, paving the way … from a wildfire that burned at the Colorado-Wyoming border, about a year after the fire. They sampled soil across a … for User Science (FICUS) initiative . In this program, researchers leverage the capabilities of more than …
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Crysten Blaby-Haas
Molecular Foundry, a nanoscale research and knowledge-based user facility at Berkeley lab. She earned her PhD in … Botany, 2022 – present  University of Florida MCS Advisory Council, 2022 – present Alumni Award, MCS, … of News and Views Article in Nature 608, 38-39 (2022) and Preview article in Cell  185, 2013-2015 (2022). Gallaher S, …
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Better Living Through Bioenergy
Pseudomonas putida to break down biomass and help bring about a more sustainable, biobased economy. They conduct research at the … Institute (JBEI) , a JGI partner and one of the four US Department of Energy Bioenergy Research Centers.  …
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JGI@25: The Human Genome Project, or the JGI’s Origin Story
… health. Three DOE national labs had people and resources focused on three human chromosomes: Lawrence Berkeley National … researchers were studying Chromosome 5, which contains about 6% of the human genome . They discovered genes linked … Laboratory had teams studying Chromosome 19, which contains about 2% of the human genome. They were interested in genes …
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Model Fern Reveals Insight into DNA Thievery in Ferns
… well as the evolution of seed plants, the fern’s distant cousin. Ceratopteris richardii, or C-fern, specifically has … undeniable power of plants, and the lessons they can teach us, are why the U.S. Department of Energy (DOE) Joint Genome … Genome Initiative in 2018 as part of its Community Science Program. The OGG has set out to generate high-quality genome …
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JGI & KBase at PAG XXVII
… by and chat with representatives from KBase and the JGI about collaborative science opportunities. Learn how to apply for a project with the JGI Community Science Program, and how you can use the KBase system to accelerate your plant genomics …
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Enlarging Windows into Understanding Gene Functions
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … His approved proposal through the JGI’s Community Science Program (CSP) focuses on a fungal comparative ENCODE project … as tough as it has been 10 years ago,” he said. “We thought about reconstructing gene regulatory networks, understanding …
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Forming Scientific Connections and Building Community
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, hosted three undergraduates and seven … from UC Merced through their long standing internship program. In just two months, the students participated in … Watch the short video here to see what they had to say about their experiences and what they’ll take with them as …
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Dan Rokhsar
Genomics group, and is past lead of the Eukaryotic Genome Program (2010-2019), and JGI Chief Informatics Officer … and evolutionary biology. Dr. Rokhsar’s research is focused on understanding the origin, evolution, and diversity … developmental biology. In addition to this evolutionary focus, his work on plant genomics is targeted towards the …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… to a pathogen. This ‘“alien’” organism — one previously unseen — is, in fact, a microscopic water mold, … scores of nurseries across the nation, elevating concerns about the pathogen to an all-time high. California … Laboratory SOD Blitz Project SODmap Mobile Oak SOD Testing Program (OakSTeP) California Oak Mortality Taskforce   …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… is central to our ability to offer host-engineering for our users,” says JGI Director Nigel Mouncey. Using CRAGE, JGI … practice ideas presented in a  Trends in Biotechnology  review piece by Yoshikuni and JGI colleagues Jing Ke and … group of bacterial strains as part of the Community Science Program (CSP)  Functional Genomics proposal call. …
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