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SIPs with Standards
… catch: SIP labwork and analysis can be very demanding.  The JGI offers SIP analysis to make these experiments accessible … Rex Malmstrom (JGI), and Roli Wilhelm (Purdue University), share a few different ways they're working to make this technique, SIP, more standardized -- more reproducible, more reusable, and more insightful, for the future …
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Crysten Blaby-Haas
Blaby-Haas joined the JGI in 2022 as lead of the Biomolecular Materials … From 2011 – 2015, she worked with Sabeeha Merchant at UCLA as a NIH Ruth L. Kirschstein National Research Service … Niyogi KK, Schmutz J, Theg SM, Blaby-Haas CE, Merchant SS. (2021) Widespread polycistronic gene expression in green …
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David Goodstein
… at Cornell, IBM, Utah State University, and semiconductor equipment manufacturer KLA-Tencor before joining the JGI in 2002. Initially focused on building tools to … across multiple genomes.  eLife 11, e78526. Li et al., 2021.  Plant Pan-Genomics Comes of Age . Annual Review of …
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Yasuo Yoshikuni
… has supported over 250 projects since it started. At the JGI, Dr. Yoshikuni also manages the Synthetic Biology … focus includes engineering of non-model yeasts for production of biofuels and renewable chemicals, developing … for building composite materials. Before joining the JGI, Dr. Yoshikuni was co-founder and chief science officer …
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A Journey Through the Evolution of the Mitochondria Internship, A Sequential Read
… or else are interested in participating in the famous JGI-UC Merced internship program. …
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Phytozome: Tutorial Workshop from 2022 CROPS Conference @HudsonAlpha
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A Complex Confection Decoded: Sugarcane Reference Genome
… by tonnage, sugarcane accounts for 80% of global sugar production. A reference genome for the sugarcane cultivar R570 … The Impact In providing a reference sugarcane  genome , the JGI provides foundational genetic information that crop … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Jane Grimwood Named HudsonAlpha Genomics Chair
Genome Sequencing Center. Grimwood heads the Library Construction group for the JGI Plant Program . Her collaborations with the JGI began … publications that Grimwood contributed to include: A 2021 Nature paper announcing a high-quality reference …
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EcoFAB 2025: Advancing Mechanistic Microbial Science Using Fabricated Ecosystems
… microbiome science from largely observational to reproducible mechanistic studies.  This conference is inspired by … (EcoFABs) designed for precise manipulation and reproducible experimentation of microbiome dynamics. Together, we will explore cutting-edge advancements in constructing, modeling, and applying these engineered ecosystems …
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IMG/M v.5.0: an integrated data management and comparative analysis system for microbial genomes and microbiomes
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Science Programs
The JGI’s Science Programs offer support to users and their research efforts.  JGI scientists lend their expertise to enhance the … for them. Their concerted efforts help maximize the JGI’s impact in advancing both user science and the DOE …
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Model Fern Reveals Insight into DNA Thievery in Ferns
… evolution and rapid changes in both genome content and structure following a genome duplication event that occured … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … to S.C.); the Key R&D Program of Zhejiang Province (grant 2021C02009 to S.X.) and Zhejiang Provincial Natural Science …
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