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Diversity and function of methyl-coenzyme M reductase-encoding archaea in Yellowstone hot springs revealed by metagenomics and mesocosm experiments
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A collection of archaeal 16S rRNA Clone-FISH cultures for probe validation in fluorescence in situ hybridization experiments
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… The U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … bases — a terabase — of soil RNA for this project, and produced the reference genomes that allowed for mapping these … in the soil samples of these varied biomes; the forests share only about 20% of their fungal species. To make useful …
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2022 Progress Report
… (IGB) seen above is home to the DOE Joint Genome Institute (JGI). Researchers from the DOE Systems Biology Knowledgebase … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility at Lawrence … and environmental challenges.   Mission  The mission of the JGI is to provide the global research community with access …
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MISIP: a data standard for the reuse and reproducibility of any stable isotope probing-derived nucleic acid sequence and experiment
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Simon Roux
… Dr. Roux joined the JGI in 2017 to lead viral genomics research as part of the … to link viruses to their host(s), collaboration with JGI users for analyzing viral datasets, and the organization … and virus-host interactions in microbial systems. Through a 2021 DOE Early Career Research Program, Dr. Roux established …
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The Megadata of Lake Mendota - Part 1: Many, Many Mers
… works.  So a few years ago, when they set out to analyze 500 metagenomes, it was the biggest project the JGI had ever put together.  The next 3 episodes are the …
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A Complex Confection Decoded: Sugarcane Reference Genome
… by tonnage, sugarcane accounts for 80% of global sugar production. A reference genome for the sugarcane cultivar R570 … The Impact In providing a reference sugarcane  genome , the JGI provides foundational genetic information that crop … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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JGIota: Looking Back at How Cow Rumen Samples Landed on a Syllabus
… Back in 2011, JGI-supported researchers published a paper in the journal … California State University campuses for biotechnology education as part of a course-based undergraduate resource … Associate Professor Matthias Hess, also the chair of the JGI User Executive Committee, on how that study went from …
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Cataloging the Microbes that Manage the Health of River Systems
… turn affecting environmental and human health, energy production and agriculture. Understanding the compositions of … systems, these communities remain understudied. Through the JGI’s Community Science Program, Colorado State University … program at Pacific Northwest National Laboratory. The JGI sequenced over 1,000 metagenomes and established …
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Ancient Algae Reveal Secrets of Plant Evolution
… and multicellularity enabled plants to develop complex structures and adapt to changing environments — ultimately … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … these algae are considered sisters to land plants, based on shared genetic traits and evolutionary lineage. They provide …
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Innovative Technology Improves Our Understanding of Bacterial Cell Signaling
… an important role in regulating microbial cellulose production and biofilm formation, which affects a number of … cyclic di-GMP in bacteria through work enabled by the JGI’s Community Science Program (CSP) . The Impact Cyclic … cellular networks with fluorescent biosensors before, but such sensors require external illumination, making them …
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