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Scientific Advisory Committee
… and strategic objectives of the JGI. The SAC serves as the Institute's key external advisory panel and advocate of the … of the committee is to take the input from the CSP Proposal Study Panel on prioritization of CSP projects and, with … and Environmental Research (BER) program, set the final sequence allocation for this program. …
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Natural Prodcast Episode 9: Roger Linington
Apple Podcasts or wherever you’re getting this and tell me why you’re listening. DAN: But, now, here’s Natural Prodcast … America brought to the UK? ROGER:  Yeah, it’s difficult to generalize, of course, but I felt overall that the British … And that’s been followed by developments in pulse sequences and improvements in the ways in which you acquire …
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Plant Program
… to regulate Earth's carbon balance, to exploring the genetic basis of how plants have naturally adapted to varied … supports the development of next-generation biofuels by studying perennial grasses and fast-growing trees as … manipulation in the laboratory. Both germplasm (sequenced mutants and natural accessions) and protocols …
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Natural Prodcast Episode 3: The Primer, Part 3
… able to explore DNA sequencing and actually get to the DNA sequence – sequences for the genes that code for the proteins that produce secondary … Something that’s you know …  ALISON: Central! DAN: That’s why they called it that! But for, maybe, people who are less …
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Special Initiatives & Programs
Overview The JGI provides sequencing, synthesis, and targeted metabolomics support for DOE-BER funded awards, … capabilities and products . A minimum request of 1 Tb of sequence data is required to qualify for BERSS. For DNA … and 200 polar/500 nonpolar metabolomics samples, and should generally conform to the guidelines for our  CSP Large Scale …
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Microbial Program
… to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those associated … energy and ecosystem management. The program aims to generate high-quality genomic datasets, particularly for … resequencing, RNA sequencing and epigenomics. Expansion of sequence space:  The JGI generates reference genomes from …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… oftentimes will bind to receptors within biosynthetic gene clusters. Specifically, these are Tet repressors that … The genes are pretty much 100% identical. We don't know why one is expressed over the other. As far as whether we're … usually serve as dimers, and then they will bind to certain sequences of DNA. And when they bind to those certain …
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Natural Prodcast Episode 18: A CSP Primer
I think for Natural Prodcast, I think the question that generally comes up that people come to me asking like is– … at JGI start with sequencing, but where else did those sequences go? Like, what are the other scientific tools we … that describe the work. In general. Scientific merit and why it’s important. The DOE mission is one of these …
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How to Submit Sequencing Samples
… the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes instructions on accessing sample-level reports and … pipelines.  You will receive automated emails as raw sequence data becomes available, and as analysis is …
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Partnerships Development Team
Developed in 2017, the PDT was established in part to help … partnered with the JGI. The Business Development Team works closely with the Berkeley Lab Intellectual Property Office … right, title, and interest to any intellectual property generated under the agreement. … CRADAs enable research …
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Natural Prodcast Episode 22: Alison Narayan
… enzymes are, right? ALISON NARAYAN: Yes, and so that’s why I don’t like that sentence. I think that sometimes, we … association that might help? Like, if you have an unknown sequence or new flavin monooxygenases, you could say, oh … could have arisen from. DAN UDWARY: OK, so sort of a phylogenetic reconstruction kind of a thing. ALISON NARAYAN: …
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Natural Prodcast Episode 15: Katherine Duncan
I was imagining some massive contraption for amplifying genes. I wasn’t really sure what actinobacteria were. Dan … Duncan: Yeah. I love actinomycetes. Dan Udwary: Tell us why. I mean, I know, but I think– Alison Takemura: I want to … of almost finished characterizing them. We’ve got genome sequences, which are just incredible. We’ve looked at the …
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