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Mission
… in doing so enabled the JGI to be the first to publish the sequence analysis of the target chromosomes 5, 16, and 19, … basis of their behavior in the environment.  The JGI genome sequences and metabolomes of microbes and microbial … environmental mission objectives. Fungi, algae, bacteria, archaea, viruses, and microbial communities of interest to …
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Natural Prodcast Episode 14: Nigel Mouncey
DAN: Got it.  NIGEL MOUNCEY: And I did that for about six years. During that time, we got acquired by DSM. And a … to some people more about down the road. Email Nigel! He’ll sequence whatever you want!  [LAUGHTER]  NIGEL MOUNCEY: We … algae plants, synthetic biology. And so we have, I think, six sessions this year. Great speaker line up. We have a …
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Synthesis
… capabilities support researchers exploring how to convert sequence into functional assessments. This is done by … design tool  … BOOST provides a suite of tools to automate sequence design for assembly by Gibson, Yeast recombination …
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Natural Prodcast Episode 20: Brian Bachmann
And at the time, it was really exciting when people would sequence [DNA]. The genome was– well, that hadn’t really … polyketide synthase and then P3. We still don’t know why 20 years later. JACKIE WINTER: It’s pretty amazing, … And that’s what I really wanted to do. And that’s why I came back to academia. And I set that up. And we …
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Viral Genomics Group
Cryptic inoviruses revealed as pervasive in bacteria and archaea across Earth’s biomes. Nature Microbiology. 4 , …
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Natural Prodcast Episode 8: Eric Schmidt
… you maybe explain what’s going on with their biology and why they’re so important to natural products? ERIC:  Sure. … I’ve seen you give a few talks on that. Can you tell us why cone snails are so cool? ERIC:  So cone snails are … turns a peptide, for example, from a disordered sequence into an antibiotic that kills bacteria through a …
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Natural Prodcast Episode 1: The Primer, Part 1
… stories about natural products, so you can get a feel for why I think they’re so important, and we’ll start to explain … more about some of the background and sort of the reasons why we want to do this. And also to provide a little more … of the fun things that I hope that I can express today is why secondary metabolism is interesting and why it is that …
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The Expanding Universe of Methane Metabolisms in Archaea
Metagenome-assembled archaeal genomes provide new insights into an ancient … carbon dioxide. Billions of years ago, methane-producing archaea likely played a key role in determining the … anaerobic methanotrophic and short-chain alkane-oxidizing archaea. They used IMG because the database already contains …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… systems determine mutualism or parasitism between some archaeal hosts and their hitchhikers. The Science Within the archaeal domain, there is a group of tiny hitchhikers. These … gaps, they must latch onto a larger host — often, a fellow archaeal microbe. Understanding how these hosts and …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… generated as part of Genomic Encyclopedia of Bacteria and Archaea (GEBA) initiative. “This project has helped to … Group. Many of these bacterial and archaeal genome sequences have been generated using techniques that the JGI … Over the years more than 3,400 genomes have been sequenced from curated DSMZ isolates, for which quality DNA …
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Special Initiatives & Programs
… capabilities and products . A minimum request of 1 Tb of sequence data is required to qualify for BERSS. For DNA … and personnel resources for genomic research and sequence-based science.  Projects include de novo generation …
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Natural Prodcast Episode 18: A CSP Primer
… at JGI start with sequencing, but where else did those sequences go? Like, what are the other scientific tools we … that describe the work. In general. Scientific merit and why it’s important. The DOE mission is one of these … section. We want to be sure that the PIs can articulate why their work falls within one of these DOE mission areas. …
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