Search

Duncan: Yeah. I love actinomycetes. Dan Udwary: Tell us why. I mean, I know, but I think– Alison Takemura: I want to … of almost finished characterizing them. We’ve got genome sequences, which are just incredible. We’ve looked at the … currently exist. We looked at chemistry, so it’s really novel. And they’re just really exciting. And it really kind …

…   Visualizing a novel, candidate viral genome found in the deep subsurface … at virus infections. Their genomes include short DNA sequences that code for CRISPR systems, which help bacteria … foreign genetic elements by incorporating short sequences from infecting viruses and phages. In these sequences are …

… projects will provide pilot data to assess feasibility of a novel approach or form the foundation for a large-scale CSP proposal submission. Sequence requests should not exceed 3 Tb in total. Proposals …

… over our interview with Dr Elizabeth (or Betsy) Parkinson from Purdue University. She’s in the Department of Chemistry … The genes are pretty much 100% identical. We don't know why one is expressed over the other. As far as whether we're … usually serve as dimers, and then they will bind to certain sequences of DNA. And when they bind to those certain …

… agricultural productivity. Research spans diverse areas — from understanding how terrestrial plants and phytoplankton … relationships as well as insights into clade-specific novelties and expansions.  … Brachypodium distachyon is an … manipulation in the laboratory. Both germplasm (sequenced mutants and natural accessions) and protocols …

… lot going on, so I took a little break, but I’m hoping that from here I can get back to a regular schedule. I’m going to … to some people more about down the road. Email Nigel! He’ll sequence whatever you want!  [LAUGHTER]  NIGEL MOUNCEY: We … secondary metabolism analysis and research as a driver for novel technologies that can serve all JGI users. Nigel has a …

The ranked proposal list, along with a recommendation from management at JGI and the other participating … … For sequencing projects, once work is under way, raw sequence data is released to NCBI’s Sequence Read Archive on a regular basis, in accordance with …

… in the project by watching Amanda Hurley’s presentation from the 2019 JGI Genomics of Energy & Environment Meeting.] … at genomes and seeing where the really hard things to sequence were, and wondering what those … what those were … functional was these secondary metabolite pathways. So why was that? What is it about secondary metabolite pathways …

DAN: Welcome back to Natural Prodcast! This is episode 4! From here on out, for a while, we’re going to be presenting … out introns and dealing with, you know, weirdness in the sequence. You know, some clusters are not clustered…   … it so easily with fungi. So…   NANCY: Yeah, I don’t know why. For example, with that – actually there’s a good talk …

… the University of Hawaii and moved there in the early ’60s from Berkeley to work on this new budding field of marine … then genomics happened. Dan: Yeah, I did my first genome sequence with you. Brad: That’s right,  Dan: JGI did it in … working with you, Dan, on this one, and we said, “Well, why don’t we have you know, the bioinformaticians go against …

… use successfully, hopefully, in the future even more so as novel therapies. And that’s how I got on that path of … culture-disconnected. Like we’ll take some soil samples and sequence all the bugs out of that or whatever. And so I was … methicillin-resistant Staphylococcus aureus . Can you share why finding treatments for these microbes is so important? …