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FICUS-NERSC/KBASE
The mission of the Joint Genome Institute is to serve the scientific community as a user facility … … For sequencing projects, once work is under way, raw sequence data is released to NCBI’s Sequence Read Archive on a regular basis, in accordance with …
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Institutional User Agreements
Appendix identifies the type of work or specific proposal to be covered under the Agreement. The signing official must have the legal authority to commit your institution or organization to the terms and conditions in the User Agreement.  These …
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Natural Prodcast Episode 22: Alison Narayan
… enzymes are, right? ALISON NARAYAN: Yes, and so that’s why I don’t like that sentence. I think that sometimes, we … association that might help? Like, if you have an unknown sequence or new flavin monooxygenases, you could say, oh … up, which is maybe not surprising. And so taking this approach of using the– predicting the ancestors that could …
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Special Initiatives & Programs
… capabilities and products . A minimum request of 1 Tb of sequence data is required to qualify for BERSS. For DNA synthesis requests, the … the refining of new technology (e.g., single-cell genomics; metagenomics, etc.).   The faculty-level scientist must be …
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DNA Synthesis Program
… a wide range of projects, from single-gene synthesis to the synthesis of entire chromosomes, advancing the … Program aims to generate large datasets to explore sequence-function relationships, advancing the discovery of … optimize genetic systems. By enabling these cutting-edge approaches, the program supports transformative research to …
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Partnerships Development Team
Developed in 2017, the PDT was established in part to help better-connect industry to JGI resources, as well as target academic, governmental … LanzaTech, a Skokie, Illinois-based company that recycles carbon emissions to make fuels and chemicals, improving air …
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Environmental Genomics Group
… in the Eloe-Fadrosh group focuses on using genome-resolved metagenomic approaches to identify and characterize genomic information from …
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Mission
… capabilities, large-scale data and professional expertise to support the global research community in studies of … computational analysis that enable systems-based scientific approaches to these challenges.     Our homepage video … in doing so enabled the JGI to be the first to publish the sequence analysis of the target chromosomes 5, 16, and 19, …
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New Lineages of Life Group
… and eukaryotic microbes and viruses in environmental sequence data. We use multi-omics (metagenomics, metatranscriptomics, single cell genomics and phylogenomics) and machine …
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Who We Are
… user facility located at Lawrence Berkeley National Laboratory. The JGI consists of around 280 researchers and support …
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Examples: Successful LOIs & Submissions
See below for examples of successful Letters of Intent to our Community Science Program Large-Scale Call, as well as successful submissions to our CSP New Investigator, CSP Functional Genomics, and … metabolic flexibility? … Microbial contributions to soil carbon storage during simulated range shifts of plant-fungal …
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Natural Prodcast Episode 11: Marnix Medema
… about the basics of genome mining, which is using DNA sequence to identify and interpret biosynthetic, secondary … biological perspective, like what was this bacterium, and why did your group want to study it? Marnix Medema: You mean … we noticed that BiG-SCAPE was very scalable compared to approaches before that. But when you wanted to include more …
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