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How to Submit Sequencing Samples
… pipelines.  You will receive automated emails as raw sequence data becomes available, and as analysis is …
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Natural Prodcast Episode 3: The Primer, Part 3
… able to explore DNA sequencing and actually get to the DNA sequence – sequences for the genes that code for the … Something that’s you know …  ALISON: Central! DAN: That’s why they called it that! But for, maybe, people who are less … is that it was found that most biosynthetic genes are found clustered in the DNA. And so if you can identify a gene …
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Natural Prodcast Episode 4: Nancy Keller
… least compared to bacteria maybe?   ALISON: And how you overcame them?    NANCY:  Yeah, okay. Of course. Fungi have a … out introns and dealing with, you know, weirdness in the sequence. You know, some clusters are not clustered…   … it so easily with fungi. So…   NANCY: Yeah, I don’t know why. For example, with that – actually there’s a good talk …
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Natural Prodcast Episode 18: A CSP Primer
… at JGI start with sequencing, but where else did those sequences go? Like, what are the other scientific tools we … areas that are less of a focus, I would say. For example, marine research is not so much of a focus within BER … that describe the work. In general. Scientific merit and why it’s important. The DOE mission is one of these …
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Natural Prodcast Episode 1: The Primer, Part 1
… stories about natural products, so you can get a feel for why I think they’re so important, and we’ll start to explain … try to find and identify natural product biosynthetic gene clusters and to do research to get a better understanding of … ALISON: Hmm. It kind of – it’s kind of like I’m smelling bacterial perfume. I mean – but it’s purposeful so it’s some …
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Natural Prodcast Episode 17: Cassandra Quave
… culture-disconnected. Like we’ll take some soil samples and sequence all the bugs out of that or whatever. And so I was … methicillin-resistant Staphylococcus aureus . Can you share why finding treatments for these microbes is so important? … on plant natural products. Rich, rich in bacterial and marine stuff. So we need more people annotating. It will …
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Natural Prodcast Episode 14: Nigel Mouncey
… already had a fermentation process with already engineered strains, but this was to further build on those to try and … little bit of looking at spinosyns trying to find related clusters at Warp Drive, which I can say we didn’t. So–  … to some people more about down the road. Email Nigel! He’ll sequence whatever you want!  [LAUGHTER]  NIGEL MOUNCEY: We …
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Natural Prodcast Episode 6: Marc Chevrette
… at genomes and seeing where the really hard things to sequence were, and wondering what those … what those were … functional was these secondary metabolite pathways. So why was that? What is it about secondary metabolite pathways … papers [on] recently – on evolution of biosynthetic gene clusters. And you and I have had some arguments over beers …
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Microbiome Data Science Team
… and comparative analysis of thousands of archaeal and bacterial type strains ( GEBA-type strains project ), the delineation of … al. (2017) Protein structure determination using metagenome sequence data. Science   355(6322):294-298 Paez-Espino D. et …
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Who We Are
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Data Policy
… are subject to a  two-year embargo starting at construct or strain delivery.  Detailed sequence information for constructs are made publicly …
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Natural Prodcast Episode 22: Alison Narayan
… enzymes are, right? ALISON NARAYAN: Yes, and so that’s why I don’t like that sentence. I think that sometimes, we … association that might help? Like, if you have an unknown sequence or new flavin monooxygenases, you could say, oh … DAN UDWARY: That’s weird. I hadn’t heard that before. Why is that? Why would that be the case? ALISON NARAYAN: …
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