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Events
…  Learn about meetings the JGI is hosting:   … New Lineages of Life (NeLLi) … Viral EcoGenomics & Applications …
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Natural Prodcast Episode 5: Brad Moore
… then genomics happened. Dan: Yeah, I did my first genome sequence with you. Brad: That’s right,  Dan: JGI did it in … working with you, Dan, on this one, and we said, “Well, why don’t we have you know, the bioinformaticians go against … a laboratory. Initially, my group really focused on marine actinobacteria. Then we moved into marine proteobacteria. …
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Institutional User Agreements
… required by the DOE for all work performed in its User Facilities, is a legally binding contract.   All User … Appendix identifies the type of work or specific proposal to be covered under the Agreement. The signing official must have the legal authority to commit your institution or organization to the terms and …
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Metabolic Network Analysis and Metatranscriptomics Reveal Auxotrophies and Nutrient Sources of the Cosmopolitan Freshwater Microbial Lineage acI
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Metabolic potential of a single cell belonging to one of the most abundant lineages in freshwater bacterioplankton
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Natural Prodcast Episode 20: Brian Bachmann
And at the time, it was really exciting when people would sequence [DNA]. The genome was– well, that hadn’t really … polyketide synthase and then P3. We still don’t know why 20 years later. JACKIE WINTER: It’s pretty amazing, … that are living there. And we’ve moved recently from actinobacteria now. And we’re focusing much of our efforts …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel … November 11, 2022, in Cell Genomics , the team focused on Actinobacteria ( Actinomycetota ), a group of bacteria with … Group. Many of these bacterial and archaeal genome sequences have been generated using techniques that the JGI …
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Natural Prodcast Episode 24: Jackie Winter and SMC
… … DAN UDWARY: Hey, everyone! Welcome to the “Self Promotion Episode” of Natural Prodcast. A … is like, what’s your origin story in natural products? Why are you doing this? JACLYN WINTER: I’ll kind of go back … have an E. coli strain that we’ve been working on that we sequenced the genome. And it has 17 resistant genes on a …
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Frequently Asked Questions: Proposal Submission
… successful letters of intent and submissions at the bottom of the page.  … Review the list of open calls ; click on … details including project types supported, sample/capacity limits, and instructions.  Many of the submissions are … for advice!      … The deliverables can range from raw sequence data to well-annotated assembled genomes to …
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Natural Prodcast Episode 4: Nancy Keller
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … out introns and dealing with, you know, weirdness in the sequence. You know, some clusters are not clustered…   … it so easily with fungi. So…   NANCY: Yeah, I don’t know why. For example, with that – actually there’s a good talk …
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Synthesis
Platform capabilities support researchers exploring how to convert sequence into functional assessments. This is done by … design tool  … BOOST provides a suite of tools to automate sequence design for assembly by Gibson, Yeast recombination …
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Natural Prodcast Episode 1: The Primer, Part 1
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … Institute, or JGI. JGI is a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory. … stories about natural products, so you can get a feel for why I think they’re so important, and we’ll start to explain …
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