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Fungal & Algal Program
The Fungal & Algal Program explores the vast diversity of fungi and … of microbial communities, cataloging gene markers, and producing environmental genomes to support both basic … The  1000 Fungal Genomes Project is a five-year project to sequence 1000 fungal genomes from across the Fungal Tree of …
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DNA Synthesis Program
The JGI’s DNA Synthesis Program supports a wide range of projects, from … Program aims to generate large datasets to explore sequence-function relationships, advancing the discovery of … … Synthesis Capabilities & Offerings … BOOST … Integrated Microbial Genomes and Microbiomes … Mycocosm … Phytozome … …
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Plant Program
With collaborative user projects, the JGI’s Plant Program delves into … development of complex biomolecules — which can include antimicrobial and anti-pest compounds.  The program is working … manipulation in the laboratory. Both germplasm (sequenced mutants and natural accessions) and protocols …
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Natural Prodcast Episode 15: Katherine Duncan
… … Dan Udwary: Hey, Alison Takemura: Hey, Dan. Dan Udwary: Today … Duncan: Yeah. I love actinomycetes. Dan Udwary: Tell us why. I mean, I know, but I think– Alison Takemura: I want to … of almost finished characterizing them. We’ve got genome sequences, which are just incredible. We’ve looked at the …
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How to Submit Sequencing Samples
Below is a brief description of the process needed to prepare and ship samples for sequencing by the JGI. … pipelines.  You will receive automated emails as raw sequence data becomes available, and as analysis is …
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Who We Are
…   The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a national user facility located at Lawrence Berkeley National …
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Natural Prodcast Episode 6: Marc Chevrette
… … DAN: You’re listening to the US. .Department of Energy Joint … at genomes and seeing where the really hard things to sequence were, and wondering what those … what those were … functional was these secondary metabolite pathways. So why was that? What is it about secondary metabolite pathways …
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Synthetic Biology Lab
The Synthetic Biology lab is divided into a DNA synthesis production group and a … DNA synthesis and assembly technologies to the broader community.  We focus our efforts on integrating database mining and sequence design with scaling the production of large, …
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Natural Prodcast Episode 23: Aaron Puri
… … DAN: Hey, everybody. Welcome back for another episode of … of their synthases so that we can start to use the DNA sequence to predict or just understand better the language … your interest in getting into natural products. DAN: Why are you here at SIMB? AARON PURI: Yeah. Thanks Jackie. …
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Environmental Genomics Group
Research in the Eloe-Fadrosh group focuses on using genome-resolved metagenomic … of metagenomes for signatures of viruses and novel microbial lineages, and reconstruct metabolic properties … within those genomes. Our aim is to more fully capture microbial and viral diversity, leading to a better …
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Partnerships Development Team
Developed in 2017, the PDT was established in part to help better-connect industry to JGI … three primary routes:  … The CSP provides the scientific community at large with access to high-throughput sequencing …
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Examples: Successful LOIs & Submissions
See below for examples of successful Letters of Intent to our Community Science Program Large-Scale Call, as well as … genetic microdiversity or core metabolic flexibility? … Microbial contributions to soil carbon storage during …
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