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Synthetic Biology Lab
… technologies to the broader community.  We focus our efforts on integrating database mining and sequence design … combinatorial libraries.  We have developed and continue to improve automated assembly pipelines bringing in new technologies, in particular …
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Special Initiatives & Programs
… sequencing, synthesis, and targeted metabolomics support for DOE-BER funded awards, including awards funded through  … in the BER funding call, proposals are NOT eligible for BERSS support through the JGI (with the exception of DE-FOA-0003453, which is eligible for BERSS). Available Resources All JGI products are …
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Data Ecosystem
To expand access to integrated data, improve tools and infrastructure as well as ensure cohesive … to both expertise and infrastructure to facilitate these efforts. Particular areas of emphasis will be the development of tools and infrastructure for microbiome data science, and the development of new …
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Natural Prodcast Episode 15: Katherine Duncan
I think it must’ve been about 2001, maybe, and so it was before smartphones and before laptops and everything. And I … Duncan: Yeah. I love actinomycetes. Dan Udwary: Tell us why. I mean, I know, but I think– Alison Takemura: I want to … that there has been quite a lot of work in recent years to improve gender equality of people entering science programs. …
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Metabolomics Technology Group
… profiling to provide direct biochemical datasets to improve our understanding of microbial metabolism. Of … networks of environmental microbes and how they transform their environment. Research Team    … For further details, please reach out to the Group Lead …
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Natural Prodcast Episode 23: Aaron Puri
… … DAN: Hey, everybody. Welcome back for another episode of Natural Prodcast. Right now I’m … it! So, that’s this episode. I still have more stuff in the pipeline, including another recording made at SIMB, and any … your interest in getting into natural products. DAN: Why are you here at SIMB? AARON PURI: Yeah. Thanks Jackie. …
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Natural Prodcast Episode 8: Eric Schmidt
… of secondary metabolism.  DAN: Hey there and welcome back for Episode 8 of Natural Prodcast. This week, we have our … you maybe explain what’s going on with their biology and why they’re so important to natural products? ERIC:  Sure. … you! We have projects in genome sequencing, DNA synthesis, transcriptomics, metabolomics, and natural products in …
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Natural Prodcast Episode 1: The Primer, Part 1
Takemura, whose voice you’ll hear in a minute – we work for the US Department of Energy Joint Genome Institute, or … stories about natural products, so you can get a feel for why I think they’re so important, and we’ll start to explain … you! We have projects in genome sequencing, DNA synthesis, transcriptomics, metabolomics, and natural products in …
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Examples: Successful LOIs & Submissions
See below for examples of successful Letters of Intent to our … Genomics, and Facilities Integrating Collaborations for User Science calls. These documents have been shared … … Elucidating Sphagnum microbiome genetic interactions for improved growth at elevated temperatures … Adaptive …
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Natural Prodcast Episode 19: Bill Fenical
… … DAN UDWARY: Hey, everyone. I’ve got a great episode for you here today. We got the opportunity to talk to one of … learned a lot so much history from this conversation about why the ocean was basically unexplored until the 70s, and … and microbes evolve, they evolve to make molecules that improve their survival. Those molecules, over evolutionary …
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GenePRIMP: a gene prediction improvement pipeline for prokaryotic genomes
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Micro-Scale Applications Group
… of single-cell genomes and directly link functional information with individual cells. Research Team    … The JGI … quantitative Stable Isotope Probing (SIP) Metagenomics pipeline that utilizes internal analytical standards to … that allow us to select specific uncultivated microbes for sequencing based on their level of metabolic activity …
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