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Secondary Metabolites Program
… of secondary metabolites across bacteria, fungi, algae and plants. These molecules, which are not essential for fundamental growth, provide critical advantages to the organisms producing them, and are often … factors and determine their binding sites across multiple genomes. Computational prediction of heterologous …
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Viral Genomics Group
… al. (2019) Minimum Information about an Uncultivated Virus Genome (MIUViG).  Nature Biotech .  37 , 29–37 Roux S, et …
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Offerings & Capabilities
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Programs & Platform Leads
As an Integrative Genome Science User Facility, the JGI plays a leadership … drive innovations that cross the boundaries of the Plant, Fungal, Algal, Microbial, Metagenome, Metabolomics, Secondary Metabolites, and DNA …
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Natural Prodcast Episode 1: The Primer, Part 1
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the … the special, natural chemical compounds that you find in plants, fungi and bacteria, basically all living things. … tree and became incorporated. And because it had some advantage to the tree – it almost certainly, you know, prevents …
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Mission
Biological and Environmental Research program, the Joint Genome Institute provides advanced genomic capabilities, … challenges.     Our homepage video includes external footage from:  University of Delaware Laura.Selbmann©PNRA. All … of our Community Science Program, characterize organisms (plants and microbes) relevant to the DOE science mission …
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Natural Prodcast Episode 13: Francisco Barona Goméz
UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast– a podcast about natural … could be a reasonable number if you are talking about a plant and a microbe interacting very stably. So it makes … the fungal farms from other fungus that want to take advantage of that resource. So in those type of situations, what …
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Metabolomics
… this identification, metabolomics enables functional genome annotation, improves understanding of the role small … samples, including organisms (e.g. microbes, fungi, plant), media in which they grow, as well as different types …
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Examples: Successful LOIs & Submissions
… to soil carbon storage during simulated range shifts of plant-fungal symbionts … Elucidation of the gene regulatory networks governing terpenoid-mediated plant environment interactions to enable advanced bioenergy …
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A Collaboration to Improve Plant Genome Annotations Across Species
To provide broad plant genomic capabilities, the DOE Joint Genome Institute works in partnership with the HudsonAlpha … Biotechnology, which specializes in genome improvement for plants. As part of that partnership, the JGI and HudsonAlpha …
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JGI@25: Using Team Science to Build Communities Around Data
… (Graphic: Neil Byers) The JGI launched the 1000 Fungal Genomes (1KFG) Project through a 2012 Community Science … for an encyclopedia of reference genomes for fungal metagenomics. Two more CSP proposals came in 2016 that would … along with 100 of his colleagues in the comparative plant genomics community. The project’s aim is to generate …
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Primer and platform effects on 16S rRNA tag sequencing
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