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Metabolomics
… variety of experimental samples, including organisms (e.g. microbes, fungi, plant), media in which they grow, as well …
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Cultivating Symbiotic Antarctic Microbes
The Antarctic lakes are a “treasure trove” of unknown microbes that play critical roles in environmental processes … consequences of microbe-microbe interactions. Using metagenomes recovered directly from environmental samples and … to that of a free-living organism. First discovered in 2011, Nanohaloarchaea are part of the DPANN (Diapherotrites, …
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Marine Microbe Contains Multitudes
… with different lifestyles. The Science The bacterium SAR324 is unusually cosmopolitan. In the ocean’s North Pacific Subtropical Gyre, microbes tend to stay localized at different depths. But … community genomes and expressed gene transcripts (metagenomes, metatranscriptomes), as well as the genomes of …
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JGI@25: Fueling Investigation into Methane-Making Microbes
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of … come from livestock — specifically, from the methane-making microbes within their rumen. There is another climate-minded … to understand. A better understanding of rumen and the microbes that live there can drive solutions into stemming …
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
In April 2020, we mark both the 50th celebration of Earth Day on … communities. He’s focusing on the Arkansas River and how microbes might be influencing its health.  He sat down with … they’re eating was different, and what they’re eating are microbes.   And so that led him to come to me with the …
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Cataloging the Microbes that Manage the Health of River Systems
Database provides details on river microbes in 90% of US continental watersheds. The Science In … National Laboratory. The JGI sequenced over 1,000 metagenomes and established standardized sequencing protocols … Biological and Environmental Research (BER) grants DE-SC0023084, DE-SC0021350, and DE-AC02-05CH11231. Partial support …
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JGIota: Looking Back at Methane-Making Microbes
… gas: methane. Those emissions mainly come from gut microbes — the bacteria and archaea breaking down plant matter. So since 2010, the JGI has supported researchers studying those …
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Tracking the Origins of Methane-Producing Microbes
Mini-Metagenomics Approach Helps Identify Novel Archaeal Methane … three pathways for methanogenesis: hydrogen-dependent and CO2-reducing, or hydrogenotrophic (most common); … applied mini-metagenomics to these samples by sorting the microbes into small pools of cells that were then sequenced …
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Assembly of 500,000 inter-specific catfish expressed sequence tags and large scale gene-associated marker development for whole genome association studies
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Corals in Hot Water Get Help From Their Microbes
When warm waters stress corals, it might be their microbes, including their photosynthetic partner, that help …
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What Happens To a Rainforest When You Dial Up Drought?
… store a big fraction of all the carbon on Earth, and soil microbes play a key role in pulling that carbon out of the … happens to that storage when a rainforest hits a drought. Tag along with their experiments in a fully enclosed, human-made ecosystem: Biosphere 2.      …
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Natural Prodcast Episode 4: Nancy Keller
… we discussed in the primer podcasts ( part 1 here , part 2 here , and part 3 here ), which you should be able to find … use natural products necessarily. Fungi are large. They’re microbes, but they’re large microbes. And they have all sorts of cool phenotypes that …
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