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… addressing key environmental challenges, such as improving soil health, carbon sequestration and bioeconomy … The program aims to generate high-quality genomic datasets, particularly for uncultivated microorganisms, by … microbial lifestyles using AI-driven analysis of such datasets. The program also collaborates with isolate collections …

… stuff, and I hope you enjoy it. And just to remind you, you can get transcripts, and show notes with links to papers … or online catalog, I guess. So we've also been able to get soils from Purdue campus itself and been able to actually … we have just recently finished the synthesis of the first set of these molecules and are exploring the promiscuity of …

… Genomics group attempts to address this question in natural soil ecosystems by combining metagenomics with other omics … and ultimately predict the main viral impacts in these microbiomes. … the range of virus-host interactions occurring in microbiomes, these omics data must be complemented with …

… Before work can start on any approved proposal – including the … Pennacchio PMO Lead, Metabolomics Program Kerrie Barry Plant and Algal Genomics Natasha Brown Supply Chain Manager …

… Adaptive strategies in a cosmopolitan and abundant soil bacterium: genetic microdiversity or core metabolic … Microbial contributions to soil carbon storage during simulated range shifts of plant-fungal symbionts … the gene regulatory networks governing terpenoid-mediated plant environment interactions to enable advanced bioenergy …

… Hey, Dan. Dan Udwary: Today we’re going to talk to Kate Duncan. And Kate is– I should ask, you are Kate Duncan? Or do … questions that we can only really address with bigger data sets and integrated data sets. So yeah, in terms of, I … transcriptomics, metabolomics, and natural products in plants, fungi, and microorganisms. If you want to …

… I’m hoping to get a new one out every two weeks. This time, we’ve got a great interview with Ben Shen, from the … I’ll put up some structures and link to some resources you can use to get caught up, if you’re not already familiar … product chemistry? BEN:  Yeah. So, I was trained as a plant natural product chemist. When I first started in …

… that know what they’re doing much better than I ever can at the level that we’re working. And so we do … to do an independent study on ethnobotany of some of the plants that people were using for medicines in this very … And so it was done, like as soon as I did that, I was set like “This! I want to do this!” And so and of course …

… of questions from scientists about whether and how they can work with the JGI, and, you know, I’m always really … genomes, a lot of effort goes into generating these data sets. There’s a lot of manual work in terms of the annotate, … related to human health or creating vaccines, human gut microbiomes. We don’t do things related to human health. In …

… nutrients into biomass. When paired with metagenomics, qSIP can decipher active microbial functions in situ. This … hard to sequence and assemble samples, such as those from soil and plants, our group researches the use and implementation of … integration and comparison of thousands of metagenomic datasets, to enable our users to identify patterns and trends …

… samples, including organisms (e.g. microbes, fungi, plant), media in which they grow, as well as different types of environments (e.g. soil, lake).  A wide range of metabolites are identified … Read more about our submission guidelines, what you can expect from your results as well as our library …

… hoping this episode and the transcripts will be one thing I can point people to when it comes to getting out information … to mentor students, teaching classes, and really setting the stage for what I really wanted to do and getting … And so we also sequence a lot of fungi, and we sequence plants. And so we started thinking about if we had a …