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Metabolomics
… strengthens -omics technologies at the JGI by identifying the actual molecules present in an environment that influence system behavior.  Through … they grow, as well as different types of environments (e.g. soil, lake).  A wide range of metabolites are identified …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
Survey of Setaria's natural diversity reveals seed dispersal in wild populations for the first time. For years, Elizabeth … them back to the lab. The weedy grass was green millet (Setaria viridis), a small model grass with a short lifecycle …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
Bacterial enzymes play second fiddle to those from fungi when it comes to breaking down tough plant fibers. The Science Walk in a temperate … Pinpointing the processes happening on and in forest soil also better enriches models of global carbon and …
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Natural Prodcast Episode 20: Brian Bachmann
… back to a new session of Natural Prodcast. I’ve got two things I wanted to tell you about in this introduction. First … in the marine ecosystems and marine actinomycetes and cyanobacteria. And we thought we could also– let’s see what caves … off through these areas. And you can do– with a teaspoon of soil from outside, you maybe have to do a 10,000-fold …
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Metagenome Program
The Metagenome Program uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work encompasses bacteria, archaea, and micro-eukaryoes, along with their …
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Mission
… by the Biological and Environmental Research program, the Joint Genome Institute provides advanced genomic capabilities, … energy and environmental mission objectives. Fungi, algae, bacteria, archaea, viruses, and microbial communities of … to contaminants such as heavy metals or radionuclides in soils, freshwater, coastal sediments (coastal here defined  …
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Natural Prodcast Episode 23: Aaron Puri
… for another episode of Natural Prodcast. Right now I’m working on this the afternoon of the day I’m due to release it, … colleagues. Aaron is doing some cool stuff with cool bacteria that I’m fascinated to learn more about. He works … could imagine if you have two colonies of bacteria in the soil or something and they’re competing with each other, if …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… planet’s microbial diversity is immense, yet much of it remains unknown. For more than a decade, researchers around the … 11, 2022, in Cell Genomics , the team focused on Actinobacteria ( Actinomycetota ), a group of bacteria with diverse metabolic activities. Found in marine …
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Natural Prodcast Episode 3: The Primer, Part 3
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … in Nature and Medicine.” It’s obviously focused more on the bacterial side of the field, and it’s a little hard to find … a new culture of a new bacteria that you pulled from the soil, maybe it’s, you know, we talked about sponges, go pull …
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Reference genome sequence of the model plant Setaria
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Exometabolite niche partitioning among sympatric soil bacteria
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Streamlining Regulon Identification in Bacteria
RIViT-seq technology could speed up associating transcription factors with their target genes. The … particularly sigma factors that initiate transcription in bacteria. Using this technology, which combines an in vitro … expand the known transcriptional regulatory network in bacteria, enabling the discovery of regulatory cascades as …
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