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Natural Prodcast Episode 7: Ben Shen
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the … natural product – they also often surprise us by giving us insights, inspires us to discover the fundamentals and then … develop enabling technologies. ie how to translate the ATGC sequence into discrete small molecules. So, Dan, I’m very …
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JGI Portals
… enable a broad community of scientists and engineers to leverage our data to develop new algorithms, models and tools in support of DOE mission priorities. Data … Download plant, algal, fungal and microbial genomes and metagenomes — top-quality genomic data, open to …
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Frequently Asked Questions: Proposal Submission
… successful letters of intent and submissions at the bottom of the page.  … Review the list of open calls ; click on the call link to see specific details including project types supported, … Many of the submissions are done using web-based forms.   To view the proposal templates, go to the proposal …
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Forest Fungi, Seagrass, and a New View of Symbiosis
… Three stories of JGI-supported research, connected to nutrient … communities of forest floor fungi. Allison Joy looks into seagrass meadows' carbon sequestration with insights from Adam Healey and Xiao Ma. And Karen Serrano and …
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Special Initiatives & Programs
… capabilities and products . A minimum request of 1 Tb of sequence data is required to qualify for BERSS. For DNA synthesis requests, the … request falls below these thresholds, you will need to utilize a core facility instead. Proposals may not exceed … using the U.S. Culture Collection Network (USCCN) to nominate their strains for sequencing, as long as they …
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Data Policy
… and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to the following Data Policy. It is our mission to support open data and information sharing. We also … is not publicly available in JGI systems or outside repositories. Full access is granted to proposal PIs, Co-PIs, and …
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FICUS-NERSC/KBASE
… The mission of the Joint Genome Institute is to serve the scientific community as a user facility pioneering functional genomics to solve the most relevant bioenergy and environmental … and readiness to begin work, checking such factors as genome size, polymorphism level, sample quality and …
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Improved chromosome-level genome assembly and annotation of the seagrass, Zostera marina (eelgrass)
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Natural Prodcast Episode 12: Nadine Ziemert
… DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a podcast about natural … it would work, but we actually found fosmids. And we sequenced the whole fosmid at the time with Sanger … University of Tübingen. This continues our short series of genome mining, the science of examining DNA sequence to try …
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Biodesign
…   The Joint Genome Institute's Biodesign Platform capabilities support researchers exploring how to convert sequence into functional assessments. This is done by … Check out our organism-agnostic CRISPR gRNA design tool  … BOOST provides a suite of tools to automate sequence design for assembly by Gibson, Yeast recombination …
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Institutional User Agreements
… Appendix identifies the type of work or specific proposal to be covered under the Agreement. The signing official must have the legal authority to commit your institution or organization to the terms and conditions in the User Agreement.  These … the Contracts Officer will send required paperwork to your institution. (Samples of the JGI User Agreement , …
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Viral Genomics Group
… and host cell take-over by viruses, and attempts to evaluate ecosystem-level impacts of viral infections. The … While an ever-increasing number of phage and virus genomes have been assembled and reported from metagenomes, … microbiome processes is still limited. One key challenge is to complement diversity surveys ( Who is there? ) with …
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