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Natural Prodcast Episode 20: Brian Bachmann
… in the early 2000s called Ecopia, which was a very early genome mining company, back when DNA sequencing of natural product pathways was hard and … And it was a big deal. And you really had– I mean, the whole sequencing endeavor, had a cost, how much blood, … Episode Transcript …
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Natural Prodcast Episode 23: Aaron Puri
… DAN: Hey, everybody. Welcome back for another episode of … And it actually was jumping onto the I ntegrated Microbial Genomes and Metagenomes, the IMG platform that JGI has that … sometimes you can be out of luck right or it could be a whole grad student thesis to synthesize a 13C-labeled …
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Sequencing Submission Requirements for DNA Synthesis
… When submitting sequences to the JGI DNA Synthesis program, please include the following items: … Sequence files for all constructs should be emailed to  Miranda Harmon-Smith, Synthetic Biology Project … How To Create an Annotated GenBank File There are several easy-to-use …
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JGI-TMF Critical Minerals and Materials Call
… to request the capabilities and expertise of both the Joint Genome Institute and the Molecular Foundry in one research … of critical minerals and materials. For accepted proposals, sequencing, synthesis, metabolomics and analysis will be … provides customized analysis, the JGI also participates in publication of results. Go here for additionial information, …
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Natural Prodcast Episode 22: Alison Narayan
… enzymes to do chemical reactions. Obviously, in my work, in genome mining, we have an awful lot of crossover, where us … the help of JGI’s DNA synthesis grant. And that having a whole panel of these enzymes allows us to ask the questions … [project] with JGI, how many flavin monooxygenases are you sequencing, sort of along that vein, of if you have one or …
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Natural Prodcast Episode 24: Jackie Winter and SMC
… Breaking Bad, I guess. But no, you trained me in how to genome mine, so thank you for that. And you had to put up … at a time when they would do one genome at a time. And the whole purpose of that was that it was one of the first … And I think a lot of times, too, when we even look at publications, it’s always positive data, right? No one ever …
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Offerings & Capabilities
… The central mission of the JGI’s Genomic Technologies department is   ensuring users have access to cutting-edge … by generating data in three overarching categories: DNA Sequencing , Biodesign and Metabolomics .  Many users rely …
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How to Submit Sequencing Samples
… Below is a brief description of the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes … 1) Review JGI sample QC requirements and protocols Obtaining DNA and RNA of … material is one of the greatest predictors of a successful sequencing project. It is imperative that users properly …
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Special Initiatives & Programs
… Overview The JGI provides sequencing, synthesis, and targeted metabolomics support for DOE-BER funded awards, … JGI (with the exceptions of DE-FOA-0003453 and DE-FOA-0003615 , which are both eligible for BERSS). Available Resources … Collection Network (USCCN) to nominate their strains for sequencing, as long as they have a scientific question that …
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JGI Portals
… The JGI’s data stewardship expertise and infrastructure enable a broad community of scientists … Download plant, algal, fungal and microbial genomes and metagenomes — top-quality genomic data, open to all researchers. … for comprehensive access to information regarding genome and metagenome sequencing projects, and their …
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CSP Functional Genomics
… The CSP Functional Genomics call is to enable users to perform … ‘omics capabilities to enhance understanding of gene and genome function, particularly those not readily achievable … form and are reviewed annually. For accepted proposals, sequencing, synthesis, metabolomics and analysis will be …
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Viral Genomics Group
… Microbes drive critical ecosystem functions and affect global nutrient cycling, however they do so under … While an ever-increasing number of phage and virus genomes have … Multiomics approaches such as metagenomics and metatranscriptomics provide … The JGI Viral Genomics group is leading and/or contributing to the …
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