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… … The IMG/M system serves as a community resource for comparative analysis and annotation of all publicly … … The Mycocosm web portal provides data access, visualization, and analysis tools for comparative genomics of fungi. Mycocosm enables users to navigate across …

… and pathway engineering Mass spectrometry based metabolomics Below is a table of standard product offerings, including a description of … to completion of standard analysis.  Raw data is provided for all sequencing products below. In addition, JGI will …

The IMG group owns and maintains integral components of JGI’s production workflow, and is responsible for the … and analysis pipelines for the interpretation of microbiome omics data Developing forward-looking strategies for the … of genome and metagenome datasets in a comprehensive comparative context. The IMG data warehouse integrates …

Data produced and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to … PIs or co-PIs) who wish to include use-restricted data in publications, or who wish to redistribute data in any way … for their planned work.   … For sequencing or metabolomics projects: data are subject to a  one-year embargo .  …

The CSP Functional Genomics call is to enable users to perform state-of-the-art functional genomics research and to help them …

The JGI’s Metabolomics Program works to uncover the roles of small molecules in biological systems, linking them with … biological and environmental samples — including microbes, fungi, plants and soils. Through a combination of …

Undergraduate Research Experience (CURE) that consists of coordinated hands-on experiments across fungal biology … through the links below. Naturalist Myco Ed Fungal Genomics Education Project MycoCosm MycoEd group page … annotation. … The Mycocosm portal supports the annotation, comparative analysis, and distribution of fungal genome …

… … DAN: Hey, everybody. Welcome back for another episode of Natural Prodcast. Right now I’m working on this the … like E. coli , and then being able to look using the metabolomics capabilities also at JGI — it’s really cool that it’s … up on previous Natural Prodcast episodes  here . Show Notes Publication: Suo Z et al. A Mesorhizobium japonicum quorum …

… … DAN: Hello, everyone, and Welcome back for Episode 14 of Natural Prodcast . There’s been a lot going on, so I took … about what are they doing. And so it’s really functional genomics. And there’s a lot of sequencing based approaches, of … help the Society grow. And so I’ve been the chair of the publications committee for the last, what is it now, five …

Over the last year, we’ve been revisiting a number of notable achievements that showcase our collaborations and … of tough plants. Thanks to gut microbes — namely, anaerobic fungi — these animals are able to pry apart plant polymers … break down plants.  In 2016, her team leveraged transcriptomics and other assays to identify and test …

… works closely with the Berkeley Lab Intellectual Property Office to facilitate these new interactions.  The PDT … high-throughput sequencing and other resources at the JGI for projects of relevance to Department of Energy missions. … Team Nigel Mouncey, JGI Director Trent Northen , JGI Metabolomics Science Program Head Yasuo Yoshikuni, JGI DNA …