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Metabolomics Program
The JGI’s Metabolomics Program works to uncover the roles of small molecules in biological systems, linking them with … The program employs advanced mass spectrometry-based methods to analyze metabolites from a wide range of … and their hosts on ecosystems.   Environmental molecular network:   ENVnet   is a comprehensive, mass …
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Natural Prodcast Episode 3: The Primer, Part 3
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … out, you probably want to go back and listen to the first two parts ( part 1 is here and part 2 is here ) so you … produce secondary metabolites. Do you recognize this? DNA 🡺 RNA 🡺 Protein ALISON: This is central dogma. DNA to RNA to …
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Environmental Genomics Group
… approaches to identify and characterize genomic information from uncultivated microbes and viruses. We develop computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial … Microbiology , 15032. 10.1038/nmicrobiol.2015.32 … Selected Publications … For further details, please reach out to the …
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Natural Prodcast Episode 13: Francisco Barona Goméz
… … DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast– a … is what. This is not new. It actually was first proposed by two authors called Firn and Jones. I’m sure that people … of natural product biosynthesis in bacteria ” The ActDES publication came out after we talked. It looks like a great …
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Plant Program
… to current problems facing humanity. A major focus are biofuel feedstock species and plant-microbe interactions, … JGI Plant Flagship speciesspecies, using deep-coverage RNA-seq analyzed in a consistant computational framework. It … the ability to discover syntenic orthologs, generate publication quality graphics and explore pangenome views of …
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Natural Prodcast Episode 11: Marnix Medema
… … Dan Udwary: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … better to do it together, to join forces instead of to make two competing tools. If we had known about your tool, Dan, … that end up being post-translationally modified into ribosomally synthesized peptide natural products. And they …
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Natural Prodcast Episode 24: Jackie Winter and SMC
Hey, everyone! Welcome to the “Self Promotion Episode” of Natural Prodcast. A little bit of a bonus episode, since … Not one of our normal interviews, but instead it’s two interviews in one. My new co-host, Jackie Winter, has … And I think a lot of times, too, when we even look at publications, it’s always positive data, right? No one ever …
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Natural Prodcast Episode 17: Cassandra Quave
Prodcast episode 17. The guest we have this week is Professor Cassandra Quave from Emory University, with joint … resources, but they don’t necessarily have the support network, the equipment, the facilities to really apply the … I think on COVID that we’re getting ready to submit for publication and have found some interesting hits for that as …
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Fungal & Algal Program
The Fungal & Algal Program explores the vast diversity of fungi and algae to unlock their potential for bioenergy, environmental sustainability, and … genomes from across the Fungal Tree of Life, from an international research team in collaboration with the JGI. …
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Natural Prodcast Episode 19: Bill Fenical
… for you here today. We got the opportunity to talk to one of the real legends of natural products, Professor Bill … today, run full-fledged marine chemical ecology programs. Two of the great students are in Georgia, in Atlanta, at … So of course, we decided, what are these? And we did the ribosomal taxonomic approach, looking at that, which allows …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… develops a computational pipeline to sift and characterize RNA virus sequences.  A zoo once offered a coloring book featuring polar bears in winter … in various shades of white. To researchers searching for sequences of RNA viruses in large data sets, their work …
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Frequently Asked Questions: Project Management
Christa Pennacchio   … You can visit the Products & Offerings section of our website for more details, including … but are provided as general guidance. … Guidance on international shipments can be found in the Sequencing Sample … for individuals associated with your proposal. Find our Publications Policy on our Data Policy & Support page.    … …
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