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Natural Prodcast
… about natural products and the science and scientists of secondary metabolism. Natural products, secondary metabolites, and specialized metabolites all refer to … Host Dan Udwary talks to luminaries in the field about current and future developments, and how the JGI can be part …
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Offerings & Capabilities
… The central mission of the JGI’s Genomic Technologies department is   … Sequencing , Biodesign and Metabolomics .  Many users rely on a multifaceted combination of genomic, transcriptomic, … and metabolomics. At the same time, the team is expanding current capabilities in strain engineering and functional …
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Natural Prodcast Episode 16: Marcy Balunas
… DAN: Hey Marcy!  ALISON: Hey Marcy?  MARCY: Hello. How’s it going?  DAN: Good. … And we’ve done some work with those and have a couple of publications out there on the chemistry. There’s so much … that’s what we see or what we saw with that particular publication. And so that was– it was a lot of fun to do that …
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Natural Prodcast Episode 23: Aaron Puri
… another episode of Natural Prodcast. Right now I’m working on this the afternoon of the day I’m due to release it, which is not ideal for me keeping myself on my self-imposed schedule. So, we’ll have to see if I’m … up on previous Natural Prodcast episodes  here . Show Notes Publication: Suo Z et al. A Mesorhizobium japonicum quorum …
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Natural Prodcast Episode 24: Jackie Winter and SMC
… DAN UDWARY: Hey, everyone! Welcome to the “Self Promotion Episode” of Natural … And I think a lot of times, too, when we even look at publications, it’s always positive data, right? No one ever … happening. And so we should have somewhere around 10, 11, 12 million BGCs in the database on the release, and …
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Natural Prodcast Episode 8: Eric Schmidt
… Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Hey there and welcome back for … theme of your research aims? ERIC:  My theme changes, but currently, my research theme really focuses on animals. I … working on solving that problem in one way or another, currently. But as of now, it’s still a hard problem that’s …
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Ecophysiology of an uncultivated lineage of Aigarchaeota from an oxic, hot spring filamentous ‘streamer’ community
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Natural Prodcast Episode 10: A Primer on Genome Mining
… about natural products and the science and scientists of secondary metabolism. Welcome back for our second season of … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … this is Challis et al, Chemistry and Biology, 2000, 211-224, 7:3 And so, you can then make predictions about …
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Natural Prodcast Episode 15: Katherine Duncan
… Dan Udwary: Hey, Alison Takemura: Hey, Dan. Dan Udwary: Today we’re going to talk … to do the website. Actually, one of my students, Darren, currently updates it, so I wouldn’t want to take the credit … is a whole bunch of information that maybe never makes its publication. And these are little tips, you know, how to …
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Institutional User Agreements
… — before any work can begin, including the submission of samples for sequencing, or the submission of sequencing data for synthesis. This agreement, … rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is …
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Products
… in: DNA and RNA sequencing, Sample and library preparation, Biodesign and pathway engineering Mass spectrometry … a table of standard product offerings, including a description of the product and deliverables as well as target cycle … audit to analyze the scientific value, demand, and costs of current offerings in the JGI product catalog. As a result …
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Metagenome Program
… to decode the genomes of microbes in their natural environments. This work encompasses bacteria, archaea, and micro-eukaryoes, along with their associated viruses and mobile genetic elements. Beyond exploring and characterizing microbial diversity, work … The Metagenome Program focuses on the high-throughput sequencing of microbial communities …
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