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Natural Prodcast Episode 18: A CSP Primer
… Alison Takemura, who’s moved on from JGI to do real journalism, and we wish her all the best. Later on, I’ll … you may have hear over there, with a few more questions specific to secondary metabolites. I hope both versions are … do the bioinformatics and to synthesize these results into publication? So there’s this really important because we …
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User Support
… that will be subject to the DOE JGI’s capabilities for sequencing, synthesis and/or metabolomics. Once materials … issues, as needed Users are notified as projects reach specific milestones, either by automated emails or emails … access your data, share with collaborators, and coordinate publication with JGI scientists. Synthetic DNA constructs …
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Natural Prodcast Episode 19: Bill Fenical
… But ultimately, they bought on. So now we have The Journal of Chemical Ecology that has a marine component. And … the cells to divide. We found all sorts of molecules with specific targets. Did we know how to find those? Not at all. … forward to seeing the data when it finally gets off the sequencers. The pandemic has obviously slowed JGI down a …
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Natural Prodcast Episode 3: The Primer, Part 3
… and the 90s. And so we started to be able to explore DNA sequencing and actually get to the DNA sequence – sequences … produce secondary metabolites. Do you recognize this? DNA 🡺 RNA 🡺 Protein ALISON: This is central dogma. DNA to RNA to … systems are also everywhere – that there are some very specific patterns and shared DNA across all of these things. …
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Metabolomics
… strengthens -omics technologies at the JGI by identifying the actual molecules present in an environment that … functional genome annotation, improves understanding of the role small molecules play in diverse biological … are identified using LC-MS/MS methods optimized for specific types of molecules.   …
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Natural Prodcast Episode 9: Roger Linington
… from the ICBG training program, which stands for International Cooperative Biodiversity Groups, and it’s this … to work on it for another week? Or do we need some kind of specific advance to to start working there? ROGER:  I think … And that’s been followed by developments in pulse sequences and improvements in the ways in which you acquire …
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Natural Prodcast Episode 12: Nadine Ziemert
… And we have to focus on one thing to really get into that specific, but that sometimes makes you lose the big picture. … I think. DAN UDWARY: Yeah, and that was a JGI Community Sequencing Project. You’re right, yeah. NADINE ZIEMERT: Yes. … Usually, in a lot of cases, we still have to go through publications to get proteins, and their functions, and all …
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Comparative Genomics and Transcriptomics to Analyze Fruiting Body Development in Filamentous Ascomycetes
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Single Cell Research Group
… Research in the Woyke laboratory focuses on the utility of single-cell methods to access genetic material of uncultivated taxa of interest. One such effort is … single cells are characterized and selected as based on a specific functional trait or phenotype of interest, prior to …
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JGI-TMF Critical Minerals and Materials Call
… for researchers to request the capabilities and expertise of both the Joint Genome Institute and the Molecular Foundry … of critical minerals and materials. For accepted proposals, sequencing, synthesis, metabolomics and analysis will be … provides customized analysis, the JGI also participates in publication of results. Go here for additionial information, …
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Natural Prodcast Episode 22: Alison Narayan
… because I have this question, we have this discussion internally in my group quite frequently. OK, so imagine this … the same in the Venn diagram. DAN UDWARY: Do you need less specificity to be a broadly useful biocatalyst? Is that the … [project] with JGI, how many flavin monooxygenases are you sequencing, sort of along that vein, of if you have one or …
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Community Science Program
… community at large with access to high-throughput sequencing, synthesis, and metabolomics at the JGI for projects of relevance to Department of Energy (DOE)  Mission Areas . … more customized analysis, the JGI also participates in publication of results. See more details on our Review …
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