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The standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v.4)
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Data Policy
Data produced and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to … PIs or co-PIs) who wish to include use-restricted data in publications, or who wish to redistribute data in any way … (raw or processed), the embargo starts at completion of standard deliverables as described in the  product offerings …
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Natural Prodcast Episode 11: Marnix Medema
… … Dan Udwary: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … up a tiny bit and just say what antiSMASH actually is and does. Marnix Medema: Yeah. So antiSMASH. We built antiSMASH … it will check it and see whether the quantity is up to standard, and maybe it gives you some feedback as a …
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User Advisory Committees
All staff members of the US Department of Energy (DOE) Joint Genome Institute (JGI) commit to Lawrence … including technical capabilities offered, proposal review procedures and the annual user meeting. The UEC also acts as …
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Frequently Asked Questions: Project Management
Christa Pennacchio   … You can visit the Products & Offerings section of our website for more details, including … request a JGI Single Sign On account at https://signon.jgi.doe.gov . This account can then be used to submit proposals, … for individuals associated with your proposal. Find our Publications Policy on our Data Policy & Support page.    … …
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Fungal & Algal Program
The Fungal & Algal Program explores the vast diversity of fungi and algae to unlock their potential for bioenergy, … Program aims to streamline genome analysis workflows for microbial eukaryotes, build fungal and algal pangenomes, and … an international research team in collaboration with the JGI. Conserved Fungal Genes of Unknown Function offer a …
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Micro-Scale Applications Group
Micro-Scale Applications group explores the genetic makeup of natural microbial communities using a variety of … information with individual cells. Research Team    … The JGI uniquely offers the first quantitative Stable Isotope … Metagenomics pipeline that utilizes internal analytical standards to accurately measure environmental microbiome …
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DNA Synthesis Program
The JGI’s DNA Synthesis Program supports a wide range of … scientists to drive innovations that align with DOE's missions. … The DNA Synthesis Program plays a central …
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Metabolomics Program
The JGI’s Metabolomics Program works to uncover the roles of … in living systems, particularly as they relate to DOE missions in the bioeconomy, sustainability, and …
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Plant Program
… to current problems facing humanity. A major focus are biofuel feedstock species and plant-microbe interactions, … discussion with the JGI Plant Genome Advisory Committee and DOE, designating a set of JGI plant genomes that are the … the ability to discover syntenic orthologs, generate publication quality graphics and explore pangenome views of …
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Single Cell Research Group
Research in the Woyke laboratory focuses on the utility of single-cell methods to access genetic material of … in 1985, which highlights our skewed understanding of microbial metabolism towards a minority of cultivated … … Research Interests … Former Lab Members … Selected Publications … For further details, please reach out to the …
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Natural Prodcast Episode 23: Aaron Puri
… … DAN: Hey, everybody. Welcome back for another episode of Natural Prodcast. Right now I’m working on this the … Alison is no longer with us… She’s alive! She just doesn’t work for JGI anymore! [LAUGHTER] AARON PURI: Yeah. … up on previous Natural Prodcast episodes  here . Show Notes Publication: Suo Z et al. A Mesorhizobium japonicum quorum …
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