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Machine learning sheds light on microbial dark proteins
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Natural Prodcast Episode 12: Nadine Ziemert
… … DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s … Usually, in a lot of cases, we still have to go through publications to get proteins, and their functions, and all … I’m looking forward to trying out ARTS 2.0, which was published shortly after we talked. …
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Plant-Microbial Interactions Group
… are complex organisms that harbor a fantastic diversity of cell types and associated organisms, including fungal and bacterial symbionts, detrimental … of plant/environmental responses … Selected Publications … Research Team Alumni … For further details, …
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Filling in the Plant Tree of Life
… we understood plants and how they adapt to their ever-changing environments better? We could unlock new innovations to … crops. But most available genomes are from narrow swaths of the plant tree of life. One project aims to change that. …
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NeLLi — Symposium on New Lineages of Life
The DOE Joint Genome Institute hosted the hybrid “NeLLi 2023 Symposium” delving into the most recent expansions of the Tree of Life and latest discoveries toward the … data have provided a means to access novel microbial lineages, leading to a new appreciation for the extent of …
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Natural Prodcast Episode 16: Marcy Balunas
… one that the Hawaiian bobtail squid is famous for is the light organ.  And the light organ houses Vibrio fischeri, … And we’ve done some work with those and have a couple of publications out there on the chemistry. There’s so much … new chemistry happening.  And so one of the recently published papers was about doing this with human pathogens. And I …
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Natural Prodcast Episode 24: Jackie Winter and SMC
… it was– I like interacting with new people and seeing that light bulb go on when all of a sudden like, you know, that … And I think a lot of times, too, when we even look at publications, it’s always positive data, right? No one ever … there, but yeah, all that stuff is just sort of being finished up at the moment. And by the time you hear this, …
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Sequencing the fungal tree of life
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Environmental Genomics Group
Research in the Eloe-Fadrosh group focuses on using genome-resolved … metagenomes for signatures of viruses and novel microbial lineages, and reconstruct metabolic properties encoded … Microbiology , 15032. 10.1038/nmicrobiol.2015.32 … Selected Publications … For further details, please reach out to the …
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Natural Prodcast Episode 6: Marc Chevrette
… … DAN: You’re listening to the US. .Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … couple years before joining Warp Drive. And what kind of pushed me towards the secondary metabolism side of things was …
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Mission
… by the Biological and Environmental Research program, the Joint Genome Institute provides advanced genomic capabilities, … Berkeley Lab, leased laboratory and office space in a light industrial park in Walnut Creek, California, to … freely to the public databases. In 2004, the JGI established itself as a national user facility, and has grown to …
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JGI@25: Using Team Science to Build Communities Around Data
In honor of the JGI's 25th anniversary in 2022, we have … are pending samples from users. Roughly 300 have been published. Spatafora said the work has “significantly advanced … genomes that are both large and complex. The first publication of a genome generated by the OGG initiative — …
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