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Data Policy
… Data produced and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to the following Data … of certain types of data to support their use by those generating data. The JGI Data Policy applies to research … PIs or co-PIs) who wish to include use-restricted data in publications, or who wish to redistribute data in any way …
Learn more
Natural Prodcast Episode 20: Brian Bachmann
… DAN UDWARY: Hey everyone and welcome back to a new session of Natural Prodcast. I’ve got two things I wanted to tell … which was a very early genome mining company, back when DNA sequencing of natural product pathways was hard and … It was unpublished at that point. But people would push out gene clusters maybe once a month at most. Maybe twice a …
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Microbiome Data Science Team
… and other omics technologies.  The exponential growth of DNA sequencing data, coupled with recent computational … advances in management, processing and visualization of “big data,” and artificial Intelligent/machine learning … (Nature 2019). Other projects in the group include the sequencing and comparative analysis of thousands of archaeal …
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DOE Metrics
… FY 2026 DOE Metrics Sequencing Quarter Total Bases (Trillions) Operating Hours Goal  Actual Total*   Actual % of Goal   Goal (hours)**   Actual Total   Actual % Goal   FY … developments for improving microbial, metagenomic, or plant genome assemblies. [Download PDF] Q2 – Report on progress …
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Natural Prodcast Episode 12: Nadine Ziemert
… DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … I think. DAN UDWARY: Yeah, and that was a JGI Community Sequencing Project. You’re right, yeah. NADINE ZIEMERT: Yes. … Usually, in a lot of cases, we still have to go through publications to get proteins, and their functions, and all …
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JGI Portals
… expertise and infrastructure enable a broad community of scientists and engineers to leverage our data to develop new algorithms, models and tools in support of DOE mission priorities. Data discoverability and … critical requirements for amplifying the JGI’s impact. Data generated from a single investment will be reused for …
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How to Submit Sequencing Samples
… Below is a brief description of the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes … sample QC requirements and protocols Obtaining DNA and RNA of suitable quantity and quality has been the rate-limiting … material is one of the greatest predictors of a successful sequencing project. It is imperative that users properly …
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Natural Prodcast Episode 7: Ben Shen
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … started collaborating with Ben and his group to work on sequencing, synthesis and genome mining technology to help access complicated natural product gene clusters, and we’re all really excited about that, and …
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Natural Prodcast Episode 16: Marcy Balunas
… know that that’s ever necessarily like a good description of anyone because chemistry means a lot, especially when … And we’ve done some work with those and have a couple of publications out there on the chemistry. There’s so much … really exciting work on figuring out how to get genomic sequencing data for the fungus garden because it’s more …
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Industry Engagement Program
… joined the JGI in 2017, he brought with him 20 years of industry experience — and an opportunity to expand the … including User Facilities like the JGI, through its Genesis Mission. Launched in 2025, the initiative aims to … Industry Partners access to our vast set of resources:  JGI sequencing technologies include scaling technologies and …
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Natural Prodcast Episode 5: Brad Moore
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … genomics existed. This is before we’re even thinking of genes and connecting genes to molecules, which is something … Bill Fenical. And we connected to JGI through the Community Sequencing Program, and they worked with us to sequence two …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… schedule. This should be coming out on the first Thursday of the month, just like I promised. Now I just have to make … oftentimes will bind to receptors within biosynthetic gene clusters. Specifically, these are Tet repressors that … technology.] BETSY PARKINSON: OK. DNA affinity purification sequencing. And so the way this essentially works is you …
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