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Microbiome Data Science Team
… a revolution brought on by rapid developments in genomics and other omics technologies.  The exponential growth of DNA sequencing data, coupled with recent computational technology advances in management, … of data science in tackling grand challenges in Biology, with a special focus on microbiome research.  These efforts …
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Community Science Program
… Program (CSP) provides the scientific community at large with access to high-throughput sequencing, synthesis, and … PIs who have never led a JGI project, and the Functional Genomics call is for projects that translate genomic … biological function. The  New Investigator and Functional Genomics calls do not require an LOI.  Projects will be …
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Institutional User Agreements
… Every approved proposal starts with a User Agreement — before any work can begin, including … rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is usually an individual in a central office, … Requirements ACADEMIC, NON-PROFIT or COMMERCIAL PROPOSALS with MULTIPLE COLLABORATORS: The submitting researcher’s …
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CSP Functional Genomics
… The CSP Functional Genomics call is to enable users to perform state-of-the-art functional genomics research and to help them translate genomic … genome function, particularly those not readily achievable without the capabilities and expertise available at the JGI. …
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Natural Prodcast Episode 13: Francisco Barona Goméz
… of secondary metabolism. Hey everybody, this is Dan with episode 13 of National Prodcast. This continues our … they don’t tend to be exposed to many dramatic changes, environmentally speaking. It’s hard to imagine that there … find these definitions useful and we can really start testing and organizing things beyond artificial names. …
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Plant Program
… With collaborative user projects, the JGI’s Plant Program … role in capturing carbon, detoxifying soils, interacting with other organisms, and adapting to environmental changes. The program lays the groundwork for … of natural compounds that support disease resistance, with applications in sustainable agriculture, including the …
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FICUS-NERSC/KBASE
… community as a user facility pioneering functional genomics to solve the most relevant bioenergy and environmental problems.  The mission of the National Energy … order by the reviewers. The ranked proposal list, along with a recommendation from management at JGI and the other …
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Who We Are
… of 225 researchers and support staff in the Integrative Genomics Building in Berkeley, California.  Our location at the IGB fosters team science and collaboration with partner organizations such as the DOE Systems Biology … Supported by the DOE Office of Science's Biological and Environmental Research program, the JGI integrates the …
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Natural Prodcast Episode 24: Jackie Winter and SMC
… Metabolism Collaboratory data portal I’ve been working on with my colleagues Drew Doering and Bryce Foster and too … me to ask you about SMC and– DAN UDWARY: Yeah, I guess we reverse it, right? You can interview me, and otherwise, I’m … And I think a lot of times, too, when we even look at publications, it’s always positive data, right? No one ever …
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Special Initiatives & Programs
… are NOT eligible for BERSS support through the JGI (with the exceptions of DE-FOA-0003453 and DE-FOA-0003615 , … Proposals whose scope was not previously negotiated with the JGI will only be accepted pending available capacity, technical review and scope negotiation with the JGI.  Investigators with grants funded by DOE-BER …
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Natural Prodcast Episode 12: Nadine Ziemert
… episode 12 of Natural Prodcast. And it’s our conversation with Nadine Ziemert from the University of Tübingen in … Usually, in a lot of cases, we still have to go through publications to get proteins, and their functions, and all … and also the secondary metabolites will change, that was my hypothesis. And that is really what we can see. But what I …
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Products
… clones if low number of variants, or pool of variants with sample sequencing to predict the number of successful … (e.g. secondary metabolites, lipids, etc) metabolites using reverse phase chromatography coupled to tandem mass … features in spectra. 167/214 Metagenome Metatranscriptome Environmental transcript sequence Assembly, annotation ( …
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